- Gene BART1_0-u39384
- Gene IDBART1_0-u39384
- Location chr5H: 610332205 - 610342865
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU5Hr1G099490 | 65.3 | + | + | 6958 | -3703 | Containing |
Transcripts from Gene BART1_0-u39384
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u39384.001 | 6112 | 6112 bp MSTRG.39384.1 MSTRG.39384 |
| BART1_0-u39384.002 | 2905 | 2905 bp MSTRG.39384.2 MSTRG.39384 |
| BART1_0-u39384.003 | 6149 | 6149 bp MSTRG.39384.3 MSTRG.39384 |
| BART1_0-u39384.004 | 2911 | 2911 bp MSTRG.39384.4 MSTRG.39384 |
| BART1_0-u39384.005 | 2646 | 2646 bp MSTRG.39384.5 MSTRG.39384 |
| BART1_0-u39384.006 | 2642 | 2642 bp MSTRG.39384.6 MSTRG.39384 |
| BART1_0-u39384.007 | 2681 | 2681 bp MSTRG.39384.7 MSTRG.39384 |
| BART1_0-u39384.008 | 5798 | 5798 bp MSTRG.39384.8 MSTRG.39384 |
| BART1_0-u39384.009 | 3597 | 3597 bp MSTRG.39384.9 MSTRG.39384 |
| BART1_0-u39384.010 | 1869 | 1869 bp MSTRG.39384.10 MSTRG.39384 |
Exon Structure of BART1_0-u39384
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +3 | 0.0 | 687 | 385/525 (73%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+3 | 1e-115 | 379 | 235/534 (44%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.1.p | +3 | 0.0 | 800 | 440/532 (83%) | pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0006506 | GPI anchor biosynthetic process |
| GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity |
| GO:0016021 | integral component of membrane |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons