- Transcript HORVU5Hr1G099490.10
- Transcript IDHORVU5Hr1G099490.10
- Gene IDHORVU5Hr1G099490
Barley RTD
Exon Structure of HORVU5Hr1G099490.10
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 610332575 | 610332327 | + |
| chr5H | 2 | 610333705 | 610333396 | + |
| chr5H | 3 | 610335476 | 610335042 | + |
| chr5H | 4 | 610335745 | 610335608 | + |
| chr5H | 5 | 610335929 | 610335826 | + |
| chr5H | 6 | 610336235 | 610336014 | + |
| chr5H | 7 | 610337060 | 610336566 | + |
| chr5H | 8 | 610338426 | 610337999 | + |
| chr5H | 9 | 610338747 | 610338653 | + |
| chr5H | 10 | 610338859 | 610338820 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +2 | 0.0 | 896 | 483/698 (69%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+2 | 2e-114 | 360 | 223/501 (45%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.1.p | +2 | 0.0 | 1078 | 561/701 (80%) | pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2516 bp)
>HORVU5Hr1G099490.10 2516 150831_barley_pseudomolecules CGCCCGCCGCCGCCCGCTCCCGGCTCCCGCCTCTCGCTGTCCGGCTGCTTCCGCGCGAGC GCGAGCTCGACCACGCCGTTCCCCTACTGCGCGCAGCAGTAGTCCCTGCCGGCATCCCCC CGTGGCCTCCACGCAGCCGCCGGGTCGCTACCGCTCTCGCTGACTCGTGCAGGCACCGCG CAGGGGCTGCTGGCCGCTGCCTACTGCTCGGCTTTGGACAGGGGAAGCCCGGAGCCGTAT CCCCACAGGGCCACAGAAGATCAATCTCTGTTGAGTAAATAGGAATTTGGGCCTGTGATT CTGTGGTGCGGGTGCAGTTCCAGAACCTTGTGGGTCCAGCTGAACTCCCTATGCCCCACA TTTAGTCTGCCCCTGCATGGACCGGTGCAGGATCTGGTGGCCGCGCCAGCAACATCAGTC TGAATTGGAGTCCGTCTCTGCCAGATATCTCCTTTTTGGATGGCTCTTCCCCCATGCGGG GTCACTCGACATTGTTGTCGCGGCGTTCGTCTCCGAGGGAGAGATCTTGCGGTCTTTCCC CAACCTCGACACTTTCCAGACTGCTATCCTTTCCTCAAATAAAACGATGCCAACAGTGCT TCAAGAATCTGCAGCATTTACCATCCTTGGGGATTGTGTTGTACATCTTCCAAGAGATTT TGAAGGCTGCTGTGTTAAGCAAAAATATCACCTGTTGCGGGCTCAAGTTGTTCAGGCAGA GCATGCTGACACAAACCAAGACAGTTCTATTGCATTGGGTGGATCATTGGGAAGCGAAGA TCAAGACCAAAGTGAGAATAATGGAAAATGGGAATGTGATTGTAGTGTATTAGACGGTTT TCTGGATAAGTGCAAGAAGTCAGTAGTGAAACGTGGCGACTGGGTGCACTTCTGCTGTAA GCCTGAAAAGAGCTTGAAAAGCAATCTGAATCAAATTCCAGTGCTTCATCATTTGTATCT TGATGACCAGAAGGTTGAAATTAATCATTGCCACGTCATACTTTATGATGTTCCTGTTGC TGGTAGAAACCATTTCTCCCTGGGCGAGGATGCACCTTATAGGATGAAGTCCCCCTTCAA AAGGCCAAATTGGATAAATAATCTGCAAAAGAAACGACCATTTCTTGATTTGGATCCGAT TGTGTTGGCGCTTAATTGTTCAAATTCAGCTAGATTGTCAGTTGCTTGGAAAACTACTAA TAACAGCTCTGCGGCTCATTTCTTGTTTGCAACTGTGATTGATGCCTTAGTTCAAGTGGC ACAACATTTCACAGGAATAATTTTGGCTTCAGTATCAACTATTATCTACATCTTCATTCA GCTGTTCCGAAAATGTTTGAGCCATGTCTCTGAGCACTTTATATTACAAAAGGTTTTCAG ACACTCATGGAAAAACATGCATCTCCGTTGTTCCCAAATTCTTTATTGGCCGATTTTCCT CCAAGATACTTCCCTAAGCTCCTATGTGAATGTCGAATATGCACACAAAGCTGCAATCCA GAAGCATGCTTTATGGTCAAATATTATCATGGATCTTCTGATGGGTTTCATCCTTGGAGC AGCACTATTGTTGAACATGGAGACTATTTGCTCTTGGATTTTTGCTCTTCTTCACTACAT GACAGATGCTGTCTTGAGATCTGGTTGTGTGTGGCTGATGGGTGTTCCAGCAGGCTTTAA GCTGAATACTGAGTTAGCAGAGCTTCTAGGCATGATTTCTTTGAATGCAATCCAAATTTA TTCTACCCTTTGGTTCATGGTGGGAGGCTTCCTTAGGCATATAATTCAAGGCCTTGCATT TTCTGGAATTATTTTAGGTTTCACGGTTCCTGTTTCAATCTTCATTGACATTATCCAGCT TGCGACATTGCATGTTACCATGCTTCAGTGGTTAATCTCCTTAATATATTCAAGGCAGAT TCAGACAGTGACATCATTGTGGCGTCTTTTCAGAGGGCGCAAGTGGAATCCTCTTAGGCA GAGATTAGATAGCTATGACTACACGGTTGAACAACATGTGGTTGGTTCGCTGTTGTTTAC ACCAGTCTTGCTTCTTCTACCCACAGCTTCTATATTCTACATATTTTTCTCTATCTTGAG CAGCACAATCATCTGTTTGTGTATAGTGTTGGAAACTGCAATATGTATAATCCACTCTAC TCCTTATGCTGCGGTAATTCTATGGGTGACAAGGAGGCAAAGATTTCCTGCTGGATTAAT GTTCCTTCCTATGTCATCGTCATCTGTATCTACTGATGATGATGCTCTATCAGTTGAATA TCATTCAACCAGTTTATCTGGCGAAAGGAAAACAGACGAACTCATCCATGTACATTCAGT ACCACTAGTTTCAGAACTTAACTGTAACTATAACACCCTCGGACAAGTAATCGGGCCACA TTACCAGAAAGTTTTCAACGGGATCGCTCTCCCCTTCTGCAAACAACTGGCACATGGAAT CCTTAGGGGCACAAGGGATACCTACAACACTGCATCTGCCCTCTTCTCCACTGCCC