Transcript Data
Barley RTD
Links



Exon Structure of HORVU5Hr1G099490.18

ChromosomeExonStartStopDirection
chr5H1610332577610332456+
chr5H2610333705610333396+
chr5H3610335476610335042+
chr5H4610335745610335608+
chr5H5610335929610335826+
chr5H6610336235610336014+
chr5H7610337060610336566+
chr5H8610338426610337999+
chr5H9610338746610338653+
chr5H10610339141610338820+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g22370.2 +1 0.0 918 502/725 (69%) protein|N-acetylglucosaminyl transferase component, putative, expressed
TAIR PP10 AT3G57170 @ ARAPORT
AT3G57170.1 @ TAIR		 +1 3e-119 374 233/531 (44%) Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560
BRACH PP3 Bradi1g06945.1.p +1 0.0 1112 592/737 (80%) pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2670 bp)

>HORVU5Hr1G099490.18 2670 150831_barley_pseudomolecules
CACGCAGCCGCCGGGTCGCTACCGCTCTCGCTGACTCGTGCAGGCACCGCGCAGGGGCTG
CTGGCCGCTGCCTACTGCTCGGCTTTGGACAGGGGAAGCCCGGAGCCGTATCCCCACAGG
GTGCCACAGAAGATCAATCTCTGTTGAGTAAATAGGAATTTGGGCCTGTGATTCTGTGGT
GCGGGTGCAGTTCCAGAACCTTGTGGGTCCAGCTGAACTCCCTATGCCCCACATTTAGTC
TGCCCCTGCATGGACCGGTGCAGGATCTGGTGGCCGCGCCAGCAACATCAGTCTGAATTG
GAGTCCGTCTCTGCCAGATATCTCCTTTTTGGATGGCTCTTCCCCCATGCGGGGTCACTC
GACATTGTTGTCGCGGCGTTCGTCTCCGAGGGAGAGATCTTGCGGTCTTTCCCCAACCTC
GACACTTTCCAGACTGCTATCCTTTCCTCAAATAAAACGATGCCAACAGTGCTTCAAGAA
TCTGCAGCATTTACCATCCTTGGGGATTGTGTTGTACATCTTCCAAGAGATTTTGAAGGC
TGCTGTGTTAAGCAAAAATATCACCTGTTGCGGGCTCAAGTTGTTCAGGCAGAGCATGCT
GACACAAACCAAGACAGTTCTATTGCATTGGGTGGATCATTGGGAAGCGAAGATCAAGAC
CAAAGTGAGAATAATGGAAAATGGGAATGTGATTGTAGTGTATTAGACGGTTTTCTGGAT
AAGTGCAAGAAGTCAGTAGTGAAACGTGGCGACTGGGTGCACTTCTGCTGTAAGCCTGAA
AAGAGCTTGAAAAGCAATCTGAATCAAATTCCAGTGCTTCATCATTTGTATCTTGATGAC
CAGAAGGTTGAAATTAATCATTGCCACGTCATACTTTATGATGTTCCTGTTGCTGGTAGA
AACCATTTCTCCCTGGGCGAGGATGCACCTTATAGGATGAAGTCCCCCTTCAAAAGGCCA
AATTGGATAAATAATCTGCAAAAGAAACGACCATTTCTTGATTTGGATCCGATTGTGTTG
GCGCTTAATTGTTCAAATTCAGCTAGATTGTCAGTTGCTTGGAAAACTACTAATAACAGC
TCTGCGGCTCATTTCTTGTTTGCAACTGTGATTGATGCCTTAGTTCAAGTGGCACAACAT
TTCACAGGAATAATTTTGGCTTCAGTATCAACTATTATCTACATCTTCATTCAGCTGTTC
CGAAAATGTTTGAGCCATGTCTCTGAGCACTTTATATTACAAAAGGTTTTCAGACACTCA
TGGAAAAACATGCATCTCCGTTGTTCCCAAATTCTTTATTGGCCGATTTTCCTCCAAGAT
ACTTCCCTAAGCTCCTATGTGAATGTCGAATATGCACACAAAGCTGCAATCCAGAAGCAT
GCTTTATGGTCAAATATTATCATGGATCTTCTGATGGGTTTCATCCTTGGAGCAGCACTA
TTGTTGAACATGGAGACTATTTGCTCTTGGATTTTTGCTCTTCTTCACTACATGACAGAT
GCTGTCTTGAGATCTGGTTGTGTGTGGCTGATGGGTGTTCCAGCAGGCTTTAAGCTGAAT
ACTGAGTTAGCAGAGCTTCTAGGCATGATTTCTTTGAATGCAATCCAAATTTATTCTACC
CTTTGGTTCATGGTGGGAGGCTTCCTTAGGCATATAATTCAAGGCCTTGCATTTTCTGGA
ATTATTTTAGGTTTCACGGTTCCTGTTTCAATCTTCATTGACATTATCCAGCTTGCGACA
TTGCATGTTACCATGCTTCAGTGGTTAATCTCCTTAATATATTCAAGGCAGATTCAGACA
GTGACATCATTGTGGCGTCTTTTCAGAGGGCGCAAGTGGAATCCTCTTAGGCAGAGATTA
GATAGCTATGACTACACGGTTGAACAACATGTGGTTGGTTCGCTGTTGTTTACACCAGTC
TTGCTTCTTCTACCCACAGCTTCTATATTCTACATATTTTTCTCTATCTTGAGCAGCACA
ATCATCTGTTTGTGTATAGTGTTGGAAACTGCAATATGTATAATCCACTCTACTCCTTAT
GCTGCGGTAATTCTATGGGTGACAAGGAGGCAAAGATTTCCTGCTGGATTAATGTTCCTT
CCTATGTCATCGTCATCTGTATCTACTGATGATGATGCTCTATCAGTTGAATATCATTCA
ACCAGTTTATCTGGCGAAAGGAAAACAGACGAACTCATCCATGTACATTCAGTACCACTA
GTTTCAGAACTTAACTGTAACTATAACACCCTCGGACAAGTAATCGGGCCACATTACCAG
AAAGTTTTCAACGGGATCGCTCTCCCCTTCTGCAAACAACTGGCACATGGAATCCTTAGG
GGCACAAGGATACCTACAACACTGCATCTGCCCTCTTCTCCACTGCCCTGGATGCATATT
GGCATTAGAGAATACTGGATGCTTTGCCGTCGCGCGACCAAGTGGGGAAGGAATTAAAAG
TTCTCCGCTTATGATTAACTATTAGTCGCTCAGAGAATTTTTCTTAGTTGCCACCGTTTT
GTAGTGGATGTTTTGCTTTAGTTGCCTAACACAGTAACAATTGTTGGTAGTTGCCAAGAT
GTTGCGTCCTGGACTGCTTTTGTAGTACTGATACCATTTGGAGTTGAGGAATCGACACGT
AGGGAAAATTAATGTGTTTGTTACAAGCAT