- Transcript HORVU5Hr1G099490.9
- Transcript IDHORVU5Hr1G099490.9
- Gene IDHORVU5Hr1G099490
Barley RTD
Exon Structure of HORVU5Hr1G099490.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 610332576 | 610332327 | + |
| chr5H | 2 | 610333705 | 610333396 | + |
| chr5H | 3 | 610335476 | 610335042 | + |
| chr5H | 4 | 610335745 | 610335608 | + |
| chr5H | 5 | 610335929 | 610335826 | + |
| chr5H | 6 | 610336235 | 610336014 | + |
| chr5H | 7 | 610337412 | 610336670 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +3 | 0.0 | 449 | 222/361 (61%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+1 | 7e-56 | 144 | 70/128 (55%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.4.p | +3 | 0.0 | 571 | 271/365 (74%) | pacid=32803297 transcript=Bradi1g06945.4 locus=Bradi1g06945 ID=Bradi1g06945.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2202 bp)
>HORVU5Hr1G099490.9 2202 150831_barley_pseudomolecules CGCCCGCCGCCGCCCGCTCCCGGCTCCCGCCTCTCGCTGTCCGGCTGCTTCCGCGCGAGC GCGAGCTCGACCACGCCGTTCCCCTACTGCGCGCAGCAGTAGTCCCTGCCGGCATCCCCC CGTGGCCTCCACGCAGCCGCCGGGTCGCTACCGCTCTCGCTGACTCGTGCAGGCACCGCG CAGGGGCTGCTGGCCGCTGCCTACTGCTCGGCTTTGGACAGGGGAAGCCCGGAGCCGTAT CCCCACAGGGGCCACAGAAGATCAATCTCTGTTGAGTAAATAGGAATTTGGGCCTGTGAT TCTGTGGTGCGGGTGCAGTTCCAGAACCTTGTGGGTCCAGCTGAACTCCCTATGCCCCAC ATTTAGTCTGCCCCTGCATGGACCGGTGCAGGATCTGGTGGCCGCGCCAGCAACATCAGT CTGAATTGGAGTCCGTCTCTGCCAGATATCTCCTTTTTGGATGGCTCTTCCCCCATGCGG GGTCACTCGACATTGTTGTCGCGGCGTTCGTCTCCGAGGGAGAGATCTTGCGGTCTTTCC CCAACCTCGACACTTTCCAGACTGCTATCCTTTCCTCAAATAAAACGATGCCAACAGTGC TTCAAGAATCTGCAGCATTTACCATCCTTGGGGATTGTGTTGTACATCTTCCAAGAGATT TTGAAGGCTGCTGTGTTAAGCAAAAATATCACCTGTTGCGGGCTCAAGTTGTTCAGGCAG AGCATGCTGACACAAACCAAGACAGTTCTATTGCATTGGGTGGATCATTGGGAAGCGAAG ATCAAGACCAAAGTGAGAATAATGGAAAATGGGAATGTGATTGTAGTGTATTAGACGGTT TTCTGGATAAGTGCAAGAAGTCAGTAGTGAAACGTGGCGACTGGGTGCACTTCTGCTGTA AGCCTGAAAAGAGCTTGAAAAGCAATCTGAATCAAATTCCAGTGCTTCATCATTTGTATC TTGATGACCAGAAGGTTGAAATTAATCATTGCCACGTCATACTTTATGATGTTCCTGTTG CTGGTAGAAACCATTTCTCCCTGGGCGAGGATGCACCTTATAGGATGAAGTCCCCCTTCA AAAGGCCAAATTGGATAAATAATCTGCAAAAGAAACGACCATTTCTTGATTTGGATCCGA TTGTGTTGGCGCTTAATTGTTCAAATTCAGCTAGATTGTCAGTTGCTTGGAAAACTACTA ATAACAGCTCTGCGGCTCATTTCTTGTTTGCAACTGTGATTGATGCCTTAGTTCAAGTGG CACAACATTTCACAGGAATAATTTTGGCTTCAGTATCAACTATTATCTACATCTTCATTC AGCTGTTCCGAAAATGTTTGAGCCATGTCTCTGAGCACTTTATATTACAAAAGGTTTTCA GACACTCATGGAAAAACATGCATCTCCGTTGTTCCCAAATTCTTTATTGGCCGATTTTCC TCCAAGATACTTCCCTAAGCACTATTGTTGAACATGGAGACTATTTGCTCTTGGATTTTT GCTCTTCTTCACTACATGACAGATGCTGTCTTGAGATCTGGTTGTGTGTGGCTGATGGGT GTTCCAGCAGGCTTTAAGCTGAATACTGAGTTAGCAGAGCTTCTAGGCATGATTTCTTTG AATGCAATCCAAATTTATTCTACCCTTTGGTTCATGGTGGGAGGCTTCCTTAGGCATATA ATTCAAGGCCTTGCATTTTCTGGAATTATTTTAGGTTTCACGGTTCCTGTTTCAATCTTC ATTGACATTATCCAGCTTGCGACATTGCATGTTACCATGCTTCAGTGGTTAATCTCCTTA ATATATTCAAGGCAGATTCAGACAGTGACATCATTGTGGCGTCTTTTCAGGTAAACATGT TAGTATGTTGATGGATAAATGCACCTATGATCATATGAACTTTTTGTGTTTAATTACTTT ACAATATAAGAAATCTCGAAAAGAATTCATCGCACTAGAACTACATGTTGTGCATGTAAA GTTTTTGCAAAAATATGGTCATATATGTGCATCGTCCACAGAAGACAACAAATCACACTT GTAGCACAAAACATTAGTCATACATTTATGCATTTTGTACAGTGACACCATCGCCATGTT TTTATACCAAATTTCACATGTATATGTGATGAAACTGTTATTTTACTATGAACATTTTGC TTATTTAAAAAAATTATGCATGTGTACTATTTGAGTGATGGG