- Gene HORVU5Hr1G027080
- Gene IDHORVU5Hr1G027080
- Location chr5H: 153861978 - 153866641
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u34104 | 94.5 | + | + | 4664 | -273 | Containing |
Transcripts from Gene HORVU5Hr1G027080
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU5Hr1G027080.1 | 2040 | gene=HORVU5Hr1G027080 CDS=248-2038 |
| HORVU5Hr1G027080.2 | 2095 | gene=HORVU5Hr1G027080 CDS=723-2093 |
| HORVU5Hr1G027080.3 | 2429 | gene=HORVU5Hr1G027080 CDS=191-2056 |
| HORVU5Hr1G027080.4 | 2074 | gene=HORVU5Hr1G027080 CDS=180-2072 |
| HORVU5Hr1G027080.5 | 2183 | gene=HORVU5Hr1G027080 CDS=689-2050 |
| HORVU5Hr1G027080.6 | 2260 | gene=HORVU5Hr1G027080 CDS=679-2043 |
| HORVU5Hr1G027080.7 | 2061 | gene=HORVU5Hr1G027080 CDS=636-2000 |
| HORVU5Hr1G027080.8 | 2092 | gene=HORVU5Hr1G027080 CDS=1-2091 |
| HORVU5Hr1G027080.9 | 2092 | gene=HORVU5Hr1G027080 CDS=635-1927 |
| HORVU5Hr1G027080.10 | 2390 | gene=HORVU5Hr1G027080 CDS=635-2164 |
| HORVU5Hr1G027080.11 | 2081 | gene=HORVU5Hr1G027080 CDS=631-2079 |
| HORVU5Hr1G027080.12 | 1960 | gene=HORVU5Hr1G027080 CDS=2-1960 |
| HORVU5Hr1G027080.13 | 1683 | gene=HORVU5Hr1G027080 CDS=1-1683 |
| HORVU5Hr1G027080.14 | 474 | gene=HORVU5Hr1G027080 CDS=3-248 |
Exon Structure of HORVU5Hr1G027080
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g34370.1 | +2 | 0.0 | 1107 | 557/619 (90%) | protein|adaptor complexes medium subunit family protein, expressed |
| TAIR PP10 | AT2G20790 @ ARAPORT AT2G20790.1 @ TAIR |
+2 | 0.0 | 679 | 354/619 (57%) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613 |
| BRACH PP3 | Bradi4g06100.1.p | +2 | 0.0 | 1129 | 567/622 (91%) | pacid=32785976 transcript=Bradi4g06100.1 locus=Bradi4g06100 ID=Bradi4g06100.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons