- Transcript HORVU5Hr1G027080.11
- Transcript IDHORVU5Hr1G027080.11
- Gene IDHORVU5Hr1G027080
Barley RTD
Exon Structure of HORVU5Hr1G027080.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 153862295 | 153862104 | + |
| chr5H | 2 | 153862536 | 153862411 | + |
| chr5H | 3 | 153863063 | 153862750 | + |
| chr5H | 4 | 153863520 | 153863237 | + |
| chr5H | 5 | 153864517 | 153863622 | + |
| chr5H | 6 | 153864958 | 153864902 | + |
| chr5H | 7 | 153865371 | 153865323 | + |
| chr5H | 8 | 153866339 | 153866177 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g34370.1 | +1 | 0.0 | 768 | 384/429 (90%) | protein|adaptor complexes medium subunit family protein, expressed |
| TAIR PP10 | AT2G20790 @ ARAPORT AT2G20790.1 @ TAIR |
+1 | 0.0 | 496 | 254/429 (59%) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613 |
| BRACH PP3 | Bradi4g06100.2.p | +1 | 0.0 | 791 | 393/430 (91%) | pacid=32785977 transcript=Bradi4g06100.2 locus=Bradi4g06100 ID=Bradi4g06100.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2081 bp)
>HORVU5Hr1G027080.11 2081 150831_barley_pseudomolecules GTTTACGTTCGCGTACTCTTCCTGTCGTCTTCTCTACTGGTCCCTCGGAGTCTCCGGCCA TCCCATCCTAGAAACAAGCGCCAAATCCACAGCCACCGCGCGGCCACACCTCCGGCGATC CATGTCCGGCGGTGGGTGCAGCGTCCGCGCAATCTGGATCCTCACGCCAAACGACGCGGT CGCCTTCTCCAGGCGGTTTGCAGTGGTGGAGAAGCGGTGGCGGGTCGCGTGGGAGGCGGA GGGGGCGGGGAAGGGCGCGGTGATGCCGCTGCCGGCGGACTACGAGGTCGCCACCGCCTT TGCCAACCGCCGGAGAAGGGAAGGCACGGCCCGTGGCTCTGGTATCCGCACAAGCTTATC ATCCGTGGGATCGGATTCCTGGGTCGATGATCCAATCACTCGCCACATTATATCCCTTCA AATTGACAAAGAGGAAGGGGGTGGGTTTATGCTGTGGCCAGTAGTTCTTCAGAAACGTGG AAGTTATTATGTCCTTGTGCTGCCTTTGGTGGATCCTCAGGCATTTAAAGCGTTCGAGAG CCTACTGAAAAGACCTGACTGCGGGAGTTCAGCCAAAGAGAATGGCAATCTTTCTTCCAT TCTGCTCAATCTTCCGTGCATAACAGGGTAATGGCCTTTATGGTTGCGAATGTTATTGGG GACATAGTTACCGGTGATGTTGCTGAACCAGAGGTGATCGTTACTTCGGGCCCCTCTGTT GGTGGACTGTTAGATTCATTGACTGGAAGCATAGGTATTACAGCCCGGTCAAAACCTATC GCTGCACCTGTTGCAGCCCCAGTTGCATCAGTTTCTTCGCCTGTTGGTTCTGCTCAATCA GACTCTTTAAAAGGTGGTATAAGACCTTTTGACAAGGAATTACTACGAAGCTTCATCATC GGTGCCATGCCTTTTGGCACACCTCAGGATCTTAATTATGGCAATGTTTCTTCGATTAGA ACAACCGGGTATTCAGCTGATCCTCTTCCGACAGACCAGAAGCAACCTGCCTGGAAGCCT TACCTATACAAAGGGAGGCAACGGACTCTCTTTTCTAGCCTGGAGACTATAAACGCTGCA CTATATGACCGTGATGATGTGCCAGATTTCCTTTCCGTTTCGGGACAACTAACCTGTAGG GCTGAACTGGAAGGGTTACCTGATGTTTCTTTGCCACTGACTGGGTTAAAAACTGCCCGT GTGGAGGTGTCATCATTCCACCACTGTGTTCAAGCTTCAGAAGCTACTGGTGATAAGCAA TCTCTGCTATTTCAACCACCACTAGGAAATTTCGTTTTGATGCACTATCAAGCTCCATGC AACATCGATCCACCTGTTAAAGGGTTCTATCAGTTATCTATGGTATCTGAGAATGAAGGT GCTTTTCTATTTAAGCTGAGATTGATGGAGGGCTACAAGTCCCCGTTTCTTATGGAATTT TGCATGGTTACAATGCCATTTCCTCGAAGAAGAGTTGCATCATATGACGGAAATCCATCA GTTGGGACGGTTTCAATGACAGAGCATTTAATTGAGTGGAGAATTGTGTCAAGTGGCCGG GGCCTCAGTGGTAGGAGCATTGAAGCTACCTTCTCTGGTACTGTTCGATTTCATCCTAGA ACAGCACAGCGAGTAAATTCATCATTTCGGTTGGTCGCAACCACTGCATTTGCTGAAGAT AGTGATTGTGAGCAAGATAACACTAAGAATGGTGCCAACTTGGATGACTACCTCATGGAA AAAATGAACAAAGACCTTCAAGCAGTTGACTTGGAAGAGCCGTTGTCTTGGCAGGCTTAT AATTACGCTAAGGTGTCTTTTAAGATTGTTGGTGGCACCCTGTCTGGTCTTATAATCGAC CCAAGATCTGTAACCGTTTACCCTTCTGTCAAAGCCCCAGTGGAATACTCAATGCAGGGC CTCTTCTGGAGACTACATACTATGGAATACCTTAGGAAAATGTCCTTCTGCAGCTTTGCC AAAAGAATTATGATTGCCAGTGTTCAATCGCCAGGCACGGTCCTCAACGGTTTTTTGGTC CCACCACAGAGCTGTGCTGGAAGTTTTCTCTTAGTTCTTAT