- Transcript HORVU5Hr1G027080.12
- Transcript IDHORVU5Hr1G027080.12
- Gene IDHORVU5Hr1G027080
Barley RTD
Exon Structure of HORVU5Hr1G027080.12
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 153862295 | 153862113 | + |
| chr5H | 2 | 153862536 | 153862411 | + |
| chr5H | 3 | 153863058 | 153862750 | + |
| chr5H | 4 | 153863520 | 153863237 | + |
| chr5H | 5 | 153864526 | 153863622 | + |
| chr5H | 6 | 153864958 | 153864911 | + |
| chr5H | 7 | 153865371 | 153865323 | + |
| chr5H | 8 | 153866232 | 153866177 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g34370.1 | +2 | 0.0 | 1058 | 533/598 (89%) | protein|adaptor complexes medium subunit family protein, expressed |
| TAIR PP10 | AT2G20790 @ ARAPORT AT2G20790.1 @ TAIR |
+2 | 0.0 | 641 | 336/599 (56%) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613 |
| BRACH PP3 | Bradi4g06100.1.p | +2 | 0.0 | 1075 | 541/597 (91%) | pacid=32785976 transcript=Bradi4g06100.1 locus=Bradi4g06100 ID=Bradi4g06100.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1960 bp)
>HORVU5Hr1G027080.12 1960 150831_barley_pseudomolecules CGCGTACTCTTCCTGTCGTCTTCTCTACTGGTCCCTCGGAGTCTCCGGCCATCCCATCCT AGAAACAAGCGCCAAATCCACAGCCACCGCGCGGCCACACCTCCGGCGATCCATGTCCGG CGGTGGGTGCAGCGTCCGCGCAATCTGGATCCTCACGCCAAACGACGCGGTCGCCTTCTC CAGGCGGTTTGCAGTGGTGGAGAAGCGGTGGCGGGTCGCGTGGGAGGCGGAGGGGGCGGG GAAGGGCGCGGTGATGCCGCTGCCGGCGGACTACGAGGTCGCCACCGCCTTTGCCAACCG CCGGAGAAGGGAAGGCACGGCCCGTGGCTCTGGTATCCGCACAAGCTTATCATCCGTGGG ATCGGATTCCTGGGTCGATGATCCAATCACTCGCCACATTATATCCCTTCAAATTGACAA AGAGGAAGGGGGTGGGTTTATGCTGTGGCCAGTAGTTCTTCAGAAACGTGGAAGTTATTA TGTCCTTGTGCTGCCTTTGGTGGATCCTCAGGCATTTAAAGCGTTCGAGAGCCTACTGAA AAGACCTGACTGCGGGAGTTCAGCCAAAGAGAATGGCAATCTTTCTTCCATTCTGCTCAA TCTTCCGTGCATAACAGGGGCCTTTATGGTTGCGAATGTTATTGGGGACATAGTTACCGG TGATGTTGCTGAACCAGAGGTGATCGTTACTTCGGGCCCCTCTGTTGGTGGACTGTTAGA TTCATTGACTGGAAGCATAGGTATTACAGCCCGGTCAAAACCTATCGCTGCACCTGTTGC AGCCCCAGTTGCATCAGTTTCTTCGCCTGTTGGTTCTGCTCAATCAGACTCTTTAAAAGG TGGTATAAGACCTTTTGACAAGGAATTACTACGAAGCTTCATCATCGGTGCCATGCCTTT TGGCACACCTCAGGATCTTAATTATGGCAATGTTTCTTCGATTAGAACAACCGGGTATTC AGCTGATCCTCTTCCGACAGACCAGAAGCAACCTGCCTGGAAGCCTTACCTATACAAAGG GAGGCAACGGACTCTCTTTTCTAGCCTGGAGACTATAAACGCTGCACTATATGACCGTGA TGATGTGCCAGATTTCCTTTCCGTTTCGGGACAACTAACCTGTAGGGCTGAACTGGAAGG GTTACCTGATGTTTCTTTGCCACTGACTGGGTTAAAAACTGCCCGTGTGGAGGTGTCATC ATTCCACCACTGTGTTCAAGCTTCAGAAGCTACTGGTGATAAGCAATCTCTGCTATTTCA ACCACCACTAGGAAATTTCGTTTTGATGCACTATCAAGCTCCATGCAACATCGATCCACC TGTTAAAGGGTTCTATCAGTTATCTATGGTATCTGAGAATGAAGGTGCTTTTCTATTTAA GCTGAGATTGATGGAGGGCTACAAGTCCCCGTTTCTTATGGAATTTTGCATGGTTACAAT GCCATTTCCTCGAAGAAGAGTTGCATCATATGACGGAAATCCATCAGTTGGGACGGTTTC AATGACAGAGCATTTAATTGAGTGGAGAATTGTGTCAAGTGGCCGGGGCCTCAGTGGTAG GAGCATTGAAGCTACCTTCTCTGGTACTGTTCGATTTCATCCTAGAACAGCACAGCGAGT AAATTCATCATTTCGGTTGGTCGCAACCACTGCATTTGCTGAAGATAGTGATTGTGAGCA AGATAACACTAAGAATGGTGCCAACTTGGATGACTACCTCATGGAAAAAATGAACAAAGA CCTTCAAGCAGTTGACTTGGAAGAGCCGTTGTCTTGGCAGGCTTATAATTACGCTAAGGT TTGCCTCAAGATTGTTGGTGGCACCCTGTCTGGTCTTATAATCGACCCAAGATCTGTAAC CGTTTACCCTTCTGTCAAAGCCCCAGTGGAATACTCAATGCAGGGCCTCTTCTGGAGACT ACATACTATGGAATACCTTAGGAAAATGTCCTTCTGCAGC