- Gene BART1_0-u34104
- Gene IDBART1_0-u34104
- Location chr5H: 153861918 - 153866854
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU5Hr1G027080 | 94.5 | + | + | 4664 | -273 | Containing |
Transcripts from Gene BART1_0-u34104
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u34104.001 | 2776 | 2776 bp MSTRG.34104.1 MSTRG.34104 |
BART1_0-u34104.002 | 2623 | 2623 bp MSTRG.34104.2 MSTRG.34104 |
Exon Structure of BART1_0-u34104
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os12g34370.1 | +2 | 0.0 | 1108 | 557/619 (90%) | protein|adaptor complexes medium subunit family protein, expressed |
TAIR PP10 | AT2G20790 @ ARAPORT AT2G20790.1 @ TAIR |
+2 | 0.0 | 679 | 354/619 (57%) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613 |
BRACH PP3 | Bradi4g06100.1.p | +2 | 0.0 | 1128 | 567/622 (91%) | pacid=32785976 transcript=Bradi4g06100.1 locus=Bradi4g06100 ID=Bradi4g06100.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0030659 | cytoplasmic vesicle membrane |
GO:0016192 | vesicle-mediated transport |
GO:0046907 | intracellular transport |
GO:0015031 | protein transport |
GO:0005770 | late endosome |
GO:0016021 | integral component of membrane |
GO:0030131 | clathrin adaptor complex |
GO:0005829 | cytosol |
GO:0034613 | cellular protein localization |
GO:0005764 | lysosome |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons