Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G027080	94.5	+	+	4664	-273	Containing

Transcripts from Gene BART1_0-u34104

Transcript	Length(bp)	Description
BART1_0-u34104.001	2776	2776 bp MSTRG.34104.1 MSTRG.34104
BART1_0-u34104.002	2623	2623 bp MSTRG.34104.2 MSTRG.34104

Exon Structure of BART1_0-u34104

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os12g34370.1	+2	0.0	1108	557/619 (90%)	protein|adaptor complexes medium subunit family protein, expressed
TAIR PP10	AT2G20790 @ ARAPORT AT2G20790.1 @ TAIR	+2	0.0	679	354/619 (57%)	Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613
BRACH PP3	Bradi4g06100.1.p	+2	0.0	1128	567/622 (91%)	pacid=32785976 transcript=Bradi4g06100.1 locus=Bradi4g06100 ID=Bradi4g06100.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0030659	cytoplasmic vesicle membrane
GO:0016192	vesicle-mediated transport
GO:0046907	intracellular transport
GO:0015031	protein transport
GO:0005770	late endosome
GO:0016021	integral component of membrane
GO:0030131	clathrin adaptor complex
GO:0005829	cytosol
GO:0034613	cellular protein localization
GO:0005764	lysosome

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons