- Transcript HORVU5Hr1G027080.3
- Transcript IDHORVU5Hr1G027080.3
- Gene IDHORVU5Hr1G027080
Barley RTD
Exon Structure of HORVU5Hr1G027080.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 153862295 | 153862035 | + |
| chr5H | 2 | 153862536 | 153862411 | + |
| chr5H | 3 | 153863058 | 153862750 | + |
| chr5H | 4 | 153863520 | 153863237 | + |
| chr5H | 5 | 153864517 | 153863622 | + |
| chr5H | 6 | 153864958 | 153864902 | + |
| chr5H | 7 | 153865370 | 153865323 | + |
| chr5H | 8 | 153866624 | 153866177 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g34370.1 | +2 | 0.0 | 1107 | 557/619 (90%) | protein|adaptor complexes medium subunit family protein, expressed |
| TAIR PP10 | AT2G20790 @ ARAPORT AT2G20790.1 @ TAIR |
+2 | 0.0 | 679 | 354/619 (57%) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613 |
| BRACH PP3 | Bradi4g06100.1.p | +2 | 0.0 | 1129 | 567/622 (91%) | pacid=32785976 transcript=Bradi4g06100.1 locus=Bradi4g06100 ID=Bradi4g06100.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2429 bp)
>HORVU5Hr1G027080.3 2429 150831_barley_pseudomolecules CAAACACGCCCCAAATGACTTGGAATGCGTAAACTTCCAGGGAAGACGAAATCGTTAACA GGGAGGCGGGTTTACGTTCGCGTACTCTTCCTGTCGTCTTCTCTACTGGTCCCTCGGAGT CTCCGGCCATCCCATCCTAGAAACAAGCGCCAAATCCACAGCCACCGCGCGGCCACACCT CCGGCGATCCATGTCCGGCGGTGGGTGCAGCGTCCGCGCAATCTGGATCCTCACGCCAAA CGACGCGGTCGCCTTCTCCAGGCGGTTTGCAGTGGTGGAGAAGCGGTGGCGGGTCGCGTG GGAGGCGGAGGGGGCGGGGAAGGGCGCGGTGATGCCGCTGCCGGCGGACTACGAGGTCGC CACCGCCTTTGCCAACCGCCGGAGAAGGGAAGGCACGGCCCGTGGCTCTGGTATCCGCAC AAGCTTATCATCCGTGGGATCGGATTCCTGGGTCGATGATCCAATCACTCGCCACATTAT ATCCCTTCAAATTGACAAAGAGGAAGGGGGTGGGTTTATGCTGTGGCCAGTAGTTCTTCA GAAACGTGGAAGTTATTATGTCCTTGTGCTGCCTTTGGTGGATCCTCAGGCATTTAAAGC GTTCGAGAGCCTACTGAAAAGACCTGACTGCGGGAGTTCAGCCAAAGAGAATGGCAATCT TTCTTCCATTCTGCTCAATCTTCCGTGCATAACAGGGGCCTTTATGGTTGCGAATGTTAT TGGGGACATAGTTACCGGTGATGTTGCTGAACCAGAGGTGATCGTTACTTCGGGCCCCTC TGTTGGTGGACTGTTAGATTCATTGACTGGAAGCATAGGTATTACAGCCCGGTCAAAACC TATCGCTGCACCTGTTGCAGCCCCAGTTGCATCAGTTTCTTCGCCTGTTGGTTCTGCTCA ATCAGACTCTTTAAAAGGTGGTATAAGACCTTTTGACAAGGAATTACTACGAAGCTTCAT CATCGGTGCCATGCCTTTTGGCACACCTCAGGATCTTAATTATGGCAATGTTTCTTCGAT TAGAACAACCGGGTATTCAGCTGATCCTCTTCCGACAGACCAGAAGCAACCTGCCTGGAA GCCTTACCTATACAAAGGGAGGCAACGGACTCTCTTTTCTAGCCTGGAGACTATAAACGC TGCACTATATGACCGTGATGATGTGCCAGATTTCCTTTCCGTTTCGGGACAACTAACCTG TAGGGCTGAACTGGAAGGGTTACCTGATGTTTCTTTGCCACTGACTGGGTTAAAAACTGC CCGTGTGGAGGTGTCATCATTCCACCACTGTGTTCAAGCTTCAGAAGCTACTGGTGATAA GCAATCTCTGCTATTTCAACCACCACTAGGAAATTTCGTTTTGATGCACTATCAAGCTCC ATGCAACATCGATCCACCTGTTAAAGGGTTCTATCAGTTATCTATGGTATCTGAGAATGA AGGTGCTTTTCTATTTAAGCTGAGATTGATGGAGGGCTACAAGTCCCCGTTTCTTATGGA ATTTTGCATGGTTACAATGCCATTTCCTCGAAGAAGAGTTGCATCATATGACGGAAATCC ATCAGTTGGGACGGTTTCAATGACAGAGCATTTAATTGAGTGGAGAATTGTGTCAAGTGG CCGGGGCCTCAGTGGTAGGAGCATTGAAGCTACCTTCTCTGGTACTGTTCGATTTCATCC TAGAACAGCACAGCGAGTAAATTCATCATTTCGGTTGGTCGCAACCACTGCATTTGCTGA AGATAGTGATTGTGAGCAAGATAACACTAAGAATGGTGCCAACTTGGATGACTACCTCAT GGAAAAAATGAACAAAGACCTTCAAGCAGTTGACTTGGAAGAGCCGTTGTCTTGGCAGGC TTATAATTACGCTAAGGTGTCTTTTAAGATTGTTGGTGGCACCCTGTCTGGTCTTATAAT CGACCCAAGATCTGTAACCGTTTACCCTTCTGTCAAAGCCCCAGTGGAATACTCAATGCA GGCCTCTTCTGGAGACTACATACTATGGAATACCTTAGGAAAATGTCCTTCTGCAGCTTT GCCAAAAGAATTATGATTGCCAGTGTTCAATCGCCAGGCACGGTCCTCAACGGTTTTTTG GTCCCACCACAGAGCTGTGCTGGAAGTTTTCTCTTAGTTCTTATAATTAAGGAAATAGTG TTTCAAGTGGGAAACAACAAATCTGTACATCATTTTTGTCAGACAAGTTTGGTATGCTGA GCTTAGATTTCATGGCTCTATGCGATCTCGAATCCATGGTCTTCTCTTCTTAGCAATAAT AAATTTTCTACAACACTGGGATTCTTTCCATTGTATCCAAATTTGATGCTCGTTGTAATG CTATTTCGATGATCACCGCTTAAATTCATGGTGCGTTGAGAAACTGGAGACGTGCCAAGC ATGATCCAGATTTCTTTCTTTGTTCCGTT