- Transcript HORVU5Hr1G027080.4
- Transcript IDHORVU5Hr1G027080.4
- Gene IDHORVU5Hr1G027080
Barley RTD
Exon Structure of HORVU5Hr1G027080.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 153862295 | 153862046 | + |
| chr5H | 2 | 153862536 | 153862411 | + |
| chr5H | 3 | 153863058 | 153862750 | + |
| chr5H | 4 | 153863520 | 153863237 | + |
| chr5H | 5 | 153864517 | 153863622 | + |
| chr5H | 6 | 153864958 | 153864902 | + |
| chr5H | 7 | 153865370 | 153865323 | + |
| chr5H | 8 | 153866212 | 153866177 | + |
| chr5H | 9 | 153866384 | 153866317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g34370.1 | +3 | 0.0 | 1091 | 548/610 (90%) | protein|adaptor complexes medium subunit family protein, expressed |
| TAIR PP10 | AT2G20790 @ ARAPORT AT2G20790.1 @ TAIR |
+3 | 0.0 | 671 | 349/612 (57%) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613 |
| BRACH PP3 | Bradi4g06100.1.p | +3 | 0.0 | 1111 | 559/621 (90%) | pacid=32785976 transcript=Bradi4g06100.1 locus=Bradi4g06100 ID=Bradi4g06100.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2074 bp)
>HORVU5Hr1G027080.4 2074 150831_barley_pseudomolecules CAAATGACTTGGAATGCGTAAACTTCCAGGGAAGACGAAATCGTTAACAGGGAGGCGGGT TTACGTTCGCGTACTCTTCCTGTCGTCTTCTCTACTGGTCCCTCGGAGTCTCCGGCCATC CCATCCTAGAAACAAGCGCCAAATCCACAGCCACCGCGCGGCCACACCTCCGGCGATCCA TGTCCGGCGGTGGGTGCAGCGTCCGCGCAATCTGGATCCTCACGCCAAACGACGCGGTCG CCTTCTCCAGGCGGTTTGCAGTGGTGGAGAAGCGGTGGCGGGTCGCGTGGGAGGCGGAGG GGGCGGGGAAGGGCGCGGTGATGCCGCTGCCGGCGGACTACGAGGTCGCCACCGCCTTTG CCAACCGCCGGAGAAGGGAAGGCACGGCCCGTGGCTCTGGTATCCGCACAAGCTTATCAT CCGTGGGATCGGATTCCTGGGTCGATGATCCAATCACTCGCCACATTATATCCCTTCAAA TTGACAAAGAGGAAGGGGGTGGGTTTATGCTGTGGCCAGTAGTTCTTCAGAAACGTGGAA GTTATTATGTCCTTGTGCTGCCTTTGGTGGATCCTCAGGCATTTAAAGCGTTCGAGAGCC TACTGAAAAGACCTGACTGCGGGAGTTCAGCCAAAGAGAATGGCAATCTTTCTTCCATTC TGCTCAATCTTCCGTGCATAACAGGGGCCTTTATGGTTGCGAATGTTATTGGGGACATAG TTACCGGTGATGTTGCTGAACCAGAGGTGATCGTTACTTCGGGCCCCTCTGTTGGTGGAC TGTTAGATTCATTGACTGGAAGCATAGGTATTACAGCCCGGTCAAAACCTATCGCTGCAC CTGTTGCAGCCCCAGTTGCATCAGTTTCTTCGCCTGTTGGTTCTGCTCAATCAGACTCTT TAAAAGGTGGTATAAGACCTTTTGACAAGGAATTACTACGAAGCTTCATCATCGGTGCCA TGCCTTTTGGCACACCTCAGGATCTTAATTATGGCAATGTTTCTTCGATTAGAACAACCG GGTATTCAGCTGATCCTCTTCCGACAGACCAGAAGCAACCTGCCTGGAAGCCTTACCTAT ACAAAGGGAGGCAACGGACTCTCTTTTCTAGCCTGGAGACTATAAACGCTGCACTATATG ACCGTGATGATGTGCCAGATTTCCTTTCCGTTTCGGGACAACTAACCTGTAGGGCTGAAC TGGAAGGGTTACCTGATGTTTCTTTGCCACTGACTGGGTTAAAAACTGCCCGTGTGGAGG TGTCATCATTCCACCACTGTGTTCAAGCTTCAGAAGCTACTGGTGATAAGCAATCTCTGC TATTTCAACCACCACTAGGAAATTTCGTTTTGATGCACTATCAAGCTCCATGCAACATCG ATCCACCTGTTAAAGGGTTCTATCAGTTATCTATGGTATCTGAGAATGAAGGTGCTTTTC TATTTAAGCTGAGATTGATGGAGGGCTACAAGTCCCCGTTTCTTATGGAATTTTGCATGG TTACAATGCCATTTCCTCGAAGAAGAGTTGCATCATATGACGGAAATCCATCAGTTGGGA CGGTTTCAATGACAGAGCATTTAATTGAGTGGAGAATTGTGTCAAGTGGCCGGGGCCTCA GTGGTAGGAGCATTGAAGCTACCTTCTCTGGTACTGTTCGATTTCATCCTAGAACAGCAC AGCGAGTAAATTCATCATTTCGGTTGGTCGCAACCACTGCATTTGCTGAAGATAGTGATT GTGAGCAAGATAACACTAAGAATGGTGCCAACTTGGATGACTACCTCATGGAAAAAATGA ACAAAGACCTTCAAGCAGTTGACTTGGAAGAGCCGTTGTCTTGGCAGGCTTATAATTACG CTAAGGTGTCTTTTAAGATTGTTGGTGGCACCCTGTCTGGTCTTATAATCGACCCAAGAT CTGTAACCGTTTACCCTTCTGTCAAAGCCCCAGTGGAATACTCAATGCAGGCCTCTTCTG GAGACTACATACTATGGAATACCTTAGGAAGTTTTCTCTTAGTTCTTATAATTAAGGAAA TAGTGTTTCAAGTGGGAAACAACAAATCTGTACA