- Gene BART1_0-u51812
- Gene IDBART1_0-u51812
- Location chr7H: 140679356 - 140685517
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU7Hr1G044850 | 97.1 | + | + | 5982 | -180 | Containing |
Transcripts from Gene BART1_0-u51812
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u51812.001 | 3890 | 3890 bp MSTRG.51812.1 MSTRG.51812 |
BART1_0-u51812.002 | 3697 | 3697 bp MSTRG.51812.2 MSTRG.51812 |
BART1_0-u51812.003 | 3423 | 3423 bp MSTRG.51812.3 MSTRG.51812 |
BART1_0-u51812.004 | 4228 | 4228 bp MSTRG.51812.4 MSTRG.51812 |
BART1_0-u51812.005 | 3890 | 3890 bp MSTRG.51812.5 MSTRG.51812 |
BART1_0-u51812.006 | 3959 | 3959 bp MSTRG.51812.6 MSTRG.51812 |
BART1_0-u51812.007 | 3701 | 3701 bp MSTRG.51812.7 MSTRG.51812 |
BART1_0-u51812.008 | 3259 | 3259 bp MSTRG.51812.8 MSTRG.51812 |
BART1_0-u51812.009 | 4408 | 4408 bp MSTRG.51812.9 MSTRG.51812 |
BART1_0-u51812.010 | 3828 | 3828 bp MSTRG.51812.10 MSTRG.51812 |
BART1_0-u51812.011 | 3810 | 3810 bp MSTRG.51812.11 MSTRG.51812 |
BART1_0-u51812.012 | 3445 | 3445 bp MSTRG.51812.12 MSTRG.51812 |
BART1_0-u51812.013 | 3386 | 3386 bp MSTRG.51812.13 MSTRG.51812 |
BART1_0-u51812.014 | 3581 | 3581 bp MSTRG.51812.14 MSTRG.51812 |
BART1_0-u51812.015 | 3962 | 3962 bp MSTRG.51812.15 MSTRG.51812 |
BART1_0-u51812.016 | 3453 | 3453 bp MSTRG.51812.16 MSTRG.51812 |
BART1_0-u51812.017 | 4104 | 4104 bp MSTRG.51812.17 MSTRG.51812 |
BART1_0-u51812.018 | 3858 | 3858 bp MSTRG.51812.18 MSTRG.51812 |
BART1_0-u51812.019 | 3873 | 3873 bp MSTRG.51812.19 MSTRG.51812 |
BART1_0-u51812.020 | 3700 | 3700 bp MSTRG.51812.20 MSTRG.51812 |
BART1_0-u51812.021 | 3510 | 3510 bp MSTRG.51812.21 MSTRG.51812 |
BART1_0-u51812.022 | 3910 | 3910 bp MSTRG.51812.22 MSTRG.51812 |
BART1_0-u51812.023 | 3825 | 3825 bp MSTRG.51812.23 MSTRG.51812 |
BART1_0-u51812.024 | 3418 | 3418 bp MSTRG.51812.24 MSTRG.51812 |
BART1_0-u51812.025 | 3211 | 3211 bp MSTRG.51812.25 MSTRG.51812 |
BART1_0-u51812.026 | 3876 | 3876 bp MSTRG.51812.26 MSTRG.51812 |
BART1_0-u51812.027 | 3556 | 3556 bp MSTRG.51812.27 MSTRG.51812 |
BART1_0-u51812.028 | 3404 | 3404 bp MSTRG.51812.28 MSTRG.51812 |
BART1_0-u51812.029 | 3245 | 3245 bp MSTRG.51812.29 MSTRG.51812 |
BART1_0-u51812.030 | 3671 | 3671 bp MSTRG.51812.30 MSTRG.51812 |
BART1_0-u51812.031 | 3583 | 3583 bp MSTRG.51812.31 MSTRG.51812 |
BART1_0-u51812.032 | 3635 | 3635 bp MSTRG.51812.32 MSTRG.51812 |
BART1_0-u51812.033 | 3663 | 3663 bp MSTRG.51812.33 MSTRG.51812 |
BART1_0-u51812.034 | 3552 | 3552 bp MSTRG.51812.34 MSTRG.51812 |
BART1_0-u51812.035 | 3547 | 3547 bp MSTRG.51812.35 MSTRG.51812 |
BART1_0-u51812.036 | 3968 | 3968 bp MSTRG.51812.36 MSTRG.51812 |
BART1_0-u51812.037 | 3743 | 3743 bp MSTRG.51812.37 MSTRG.51812 |
BART1_0-u51812.038 | 4137 | 4137 bp MSTRG.51812.38 MSTRG.51812 |
BART1_0-u51812.039 | 3724 | 3724 bp MSTRG.51812.39 MSTRG.51812 |
BART1_0-u51812.040 | 3603 | 3603 bp MSTRG.51812.40 MSTRG.51812 |
BART1_0-u51812.041 | 3272 | 3272 bp MSTRG.51812.41 MSTRG.51812 |
BART1_0-u51812.042 | 3797 | 3797 bp MSTRG.51812.42 MSTRG.51812 |
BART1_0-u51812.043 | 3945 | 3945 bp MSTRG.51812.43 MSTRG.51812 |
BART1_0-u51812.044 | 2930 | 2930 bp MSTRG.51812.44 MSTRG.51812 |
Exon Structure of BART1_0-u51812
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 590 | 414/674 (61%) | protein|WW domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 702 | 480/676 (71%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0016021 | integral component of membrane |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons