- Transcript BART1_0-u51812.021
- Transcript IDBART1_0-u51812.021
- Gene IDBART1_0-u51812
Exon Structure of BART1_0-u51812.021
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 140679678 | 140679413 | + |
chr7H | 2 | 140680207 | 140680127 | + |
chr7H | 3 | 140680803 | 140680682 | + |
chr7H | 4 | 140681744 | 140681165 | + |
chr7H | 5 | 140683083 | 140681885 | + |
chr7H | 6 | 140684053 | 140683422 | + |
chr7H | 7 | 140684216 | 140684143 | + |
chr7H | 8 | 140684701 | 140684566 | + |
chr7H | 9 | 140685390 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.225661 | 0.000000000467938 | 0.0000000124616 |
morex | ETI | 0 | 0 | 0.000000000318694 |
morex | LEA | 0.000000000344918 | 0.0005193 | 0.0000000709279 |
morex | EPI | 0.0000313811 | 0.000108706 | 0.0317059 |
morex | ROO | 0 | 0.0000000635879 | 0.0000000189885 |
morex | ROO2 | 0.000000818727 | 0.0000000022107 | 0.0000000288651 |
morex | NOD | 0.0353973 | 0.0000127863 | 0.000000668691 |
morex | RAC | 0.00000289136 | 0 | 0.00000265804 |
morex | INF1 | 0.12921 | 0.000000000539418 | 0.017297 |
morex | INF2 | 0.00000158904 | 0.00379486 | 0.00623828 |
morex | CAR5 | 0.266885 | 7.10841 | 0.497422 |
morex | CAR15 | 0.000000112437 | 0.0000000771849 | 0.0000109068 |
morex | LEM | 0.0000000347117 | 0.0000203112 | 0.000000119862 |
morex | LOD | 0 | 0.0000183825 | 0.000000022366 |
morex | PAL | 0.00000304651 | 0.000000673804 | 0 |
morex | SEN | 0 | 0.00000672972 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 344 | 189/278 (68%) | protein|WW domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 400 | 314/429 (73%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3510 bp)
>BART1_0-u51812.021 3510 150831_barley_pseudomolecules CCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCCTGATTCGCACCG CTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAACCCTAGA ATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAGCGGCGAT GGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGGTCAAGCT CGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAGGGGAGGA AAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGATAAGAAGGAAAA TCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCAACAGA TCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTAACGA TCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCTGTTAG TGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATCACAGAAAATGTTGCTGA GGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATGGAAGC TGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAGGCTAT AATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTTACAGGAGAAACTTCTTG GGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCATCTGT GCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGCAATGT TGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCAACCTATACTGCTATGGG AACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGA CATTGACCCCTTGCAGCTTGCAAAATATGGCCACATGTTGCCATTGACAGTCTTGAGTTG ATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCT TCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTT TCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGA CACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTT GATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGT ACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCA GACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCAC GGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCA GCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCA CCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCT CCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCT CAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCC GCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATT CTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCT GTTGAGACCACATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACT ATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCC ATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAAT GTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGC CAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCT TCTACTAGTACCACTAATCAGACTAAAGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTT GCATCATCACTGAGATCTAATAAGAAGGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGA CCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCTGCTCTCTCCTACCCTACCATCAAC TGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAATTTAACTCACTGCATGATATGCAT TATTGCTAATGGTGTATACTTAGTCGTTGAGACATACTCTTGGTTATGTTATTAGCAAGA GAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGCACAACATTGGTCCTCCAGAAAAAA AACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGACTATTTCGTCTCATGTTTATCATT TCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGGT GAGTGTTGATGTATAATGATTGTTTCCTTATTAATCTACCTTTACTAAAGCGACCTTTTA TTTTATTTTATTTCACTATTACAGTGGAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAG GAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAAAGGAAACGTCGGAAGGAAATAGAT GGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCC CTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCA AAGACTGAATCTGTTTGTGCAGCTGCCGAACAACACAAAGGAGAGCCTGATCTCTCAGAG CTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATACATAGACGAGTCTACGAAGCAAGTG TACTATGGGAACAACCTCACTTCCGAGACTACTTGGGATCGGCCTAGCAAATAAAGATTG AACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGATATCCTCATACATCTATACGTTGCC TGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTTCCACTGGGAGATCGTAGCAGGAAG GATACTTCATTTTGGTATATAGAGGCATCCCTTGTAAGAGTGGCAACTTGAGATCGAATT ACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGT GGGAGTCTTTACCTCGATCTGATACCATTTGCTTTCAAAACAATGTCAATTATATTCGAT TTTAGGTTGTGCTAAATTCTAGACTTCTCC
Protein Sequence (359 aa)
>BART1_0-u51812.021 359 150831_barley_pseudomolecules PGHPPTASSLHFASPPDSHRFPFCRKTKHPDVTLQTLTLESRRRPSPPPARARLLGAAAM GRRKERRLAAKAASGRRVKLDLFLDPSPGEASTKEGVGEENREQQTGVPTSPSSSDKKEN PLALLGQYSDDEEEDEVATDQPNGETKGSSTDASAKVFNDHGDVTGDKGDADSELPASVS VQQEASQADDVKTITENVAEEFTVAPEPTLENECVTVMEAVPDSSGMQIVGDIGGNWKAI MHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTSASVPTHMGYSVEAQAHVLPHSNV EAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHESVDIDPLQLAKYGHMLPLTVLS