- Transcript BART1_0-u51812.039
- Transcript IDBART1_0-u51812.039
- Gene IDBART1_0-u51812
Exon Structure of BART1_0-u51812.039
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 140679678 | 140679466 | + |
chr7H | 2 | 140680474 | 140680127 | + |
chr7H | 3 | 140680803 | 140680682 | + |
chr7H | 4 | 140681744 | 140681165 | + |
chr7H | 5 | 140683083 | 140681885 | + |
chr7H | 6 | 140684053 | 140683422 | + |
chr7H | 7 | 140684216 | 140684143 | + |
chr7H | 8 | 140684701 | 140684566 | + |
chr7H | 9 | 140685390 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.973579 | 0.00000000238039 | 0.00157131 |
morex | ETI | 0.0000000176427 | 0.000000008239 | 0.0000250157 |
morex | LEA | 0.000114202 | 0.0000000872254 | 0 |
morex | EPI | 3.41625 | 2.14079 | 6.07496 |
morex | ROO | 0.000834528 | 1.01873 | 0.0000000028231 |
morex | ROO2 | 0.0509985 | 0.000357172 | 0.0115917 |
morex | NOD | 2.29156 | 1.25278 | 4.44594 |
morex | RAC | 1.57882 | 0.000102925 | 0.0768882 |
morex | INF1 | 0.104756 | 0.00000000789704 | 0.000036847 |
morex | INF2 | 0.000000010494 | 0.000000588485 | 1.28676 |
morex | CAR5 | 5.32623 | 0.00000810035 | 0.000000813439 |
morex | CAR15 | 0.000445224 | 0.0000359478 | 0.000000293568 |
morex | LEM | 0.00569702 | 3.65268 | 0.0348283 |
morex | LOD | 0.0000525772 | 2.33769 | 0.0032926 |
morex | PAL | 3.15324 | 0.000848876 | 0.00000244441 |
morex | SEN | 0.00000120915 | 0.0981629 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g19470.1 | +2 | 2e-167 | 322 | 266/430 (62%) | protein|WW domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 400 | 314/429 (73%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3724 bp)
>BART1_0-u51812.039 3724 150831_barley_pseudomolecules CGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAACCCTAA CCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGGGGCAG CGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCGTAGGG TCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGGAGTAG GGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGGTGGGT TCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGAATGTAAATTT GGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGGTTTGAGGCAC ATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTG TCAAAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTGAGCGTGGGGAT TTCAGGATGATTGTTGCCTCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATA GTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAA GTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAG GCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCG ATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAA CTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAA TCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTT ACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGG GGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAG AAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTG TTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTT ACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAAT ATGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGT AGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGC TGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTAC CAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGT TATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTAC TGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACA ATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGA CATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAA GGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGC TCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGAT TCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCC TGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTT GGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGC CAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTA CGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGT ACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGA ATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAA AACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGT GATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTC AGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAA AGTTCCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAA GGTCTCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGT GACCATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATC AATGAAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCG TTGAGACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTAT TTCGTGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCG TGTTTCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTG TTTACATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTC CTTATTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTG GAAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGA GTACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAG TGGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGT AAAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGC CGAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTG GCAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGA GACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTG CTCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTT CTTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGC ATCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTT GCTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACC ATTTGCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTT CTCC
Protein Sequence (350 aa)
>BART1_0-u51812.039 350 150831_barley_pseudomolecules MAPSEGEHLKVDVSTLGIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVD MEVDEEGVEEHGGFTSMPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWI PPPPPENEPAPPPPPEPEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNA SYYMQASDSHILQSQQHSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAE SSGYYGSSTSAISSGELDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASAS APTVHGSSTLASTSTTNQTKVPRTKKRPVAVASSLRSNKKVSSLVDKVSP