- Transcript BART1_0-u51812.014
- Transcript IDBART1_0-u51812.014
- Gene IDBART1_0-u51812
Exon Structure of BART1_0-u51812.014
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 140679678 | 140679401 | + |
chr7H | 2 | 140680207 | 140680127 | + |
chr7H | 3 | 140680417 | 140680340 | + |
chr7H | 4 | 140680803 | 140680682 | + |
chr7H | 5 | 140681781 | 140681165 | + |
chr7H | 6 | 140682786 | 140681885 | + |
chr7H | 7 | 140683083 | 140682884 | + |
chr7H | 8 | 140684053 | 140683422 | + |
chr7H | 9 | 140684216 | 140684143 | + |
chr7H | 10 | 140684701 | 140684566 | + |
chr7H | 11 | 140685431 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0.177002 | 0 |
morex | ETI | 0 | 0 | 0 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 0 | 0.677391 | 0 |
morex | ROO | 0 | 0.126905 | 0 |
morex | ROO2 | 0 | 0 | 0.188652 |
morex | NOD | 0 | 0 | 1.36427 |
morex | RAC | 0.947913 | 0 | 0 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 1.38305 | 0 | 0.474395 |
morex | CAR5 | 0 | 0 | 0.000000000395455 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 0 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0 | 0.225479 |
morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 582 | 377/619 (61%) | protein|WW domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 717 | 436/623 (70%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3581 bp)
>BART1_0-u51812.014 3581 150831_barley_pseudomolecules CCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCTCCTCC TGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTCCAAAC CCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTACTCGG GGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCGGGCCG TAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAAGAGGG AGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCGTCAGG GTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAGGCTGCCACTGTCAAAAC TGGGTGTGTTCCTACCGATAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGA TGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTC AACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGA TGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGA TGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCT GGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGT GGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTA CTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGT TGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGC TCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGG GAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACAC TGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGG TGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCT TGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTA TGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACT TTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGA TGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTT GAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGA ACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGT TGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGA AGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACG ATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCC TCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACC AGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATAC ACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTA CTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTC TCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATC TATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGCGGTGAATTAGATAACAAAACA AGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATA TCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCA CCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTT CCTCGTACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTC TCAAGTCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACC ATCTCTGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCAATG AAGAAATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCGTTGA GACATACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCG TGGTGCACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTT TCCTGACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTA CATGGTAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTCCTTA TTAATCTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTGGAAA GCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTAC CTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGA GAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAA CGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAA CAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAG GCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACT ACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCT GTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTT TATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCC CTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTG ACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTT GCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCC AATTATTTAACATTAGAAAGAAAGATGATTTTTAAGTTTTT
Protein Sequence (448 aa)
>BART1_0-u51812.014 448 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPAVN