- Transcript BART1_0-u51812.013
- Transcript IDBART1_0-u51812.013
- Gene IDBART1_0-u51812
Exon Structure of BART1_0-u51812.013
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 140679678 | 140679396 | + |
chr7H | 2 | 140680417 | 140680127 | + |
chr7H | 3 | 140680803 | 140680682 | + |
chr7H | 4 | 140681781 | 140681165 | + |
chr7H | 5 | 140683083 | 140681885 | + |
chr7H | 6 | 140683501 | 140683422 | + |
chr7H | 7 | 140683871 | 140683827 | + |
chr7H | 8 | 140684053 | 140683958 | + |
chr7H | 9 | 140684216 | 140684143 | + |
chr7H | 10 | 140684701 | 140684566 | + |
chr7H | 11 | 140685413 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0.00164377 | 0.002847 | 0.00618112 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 0.0149261 | 0 | 0.0125985 |
morex | ROO | 0 | 0.00000000174616 | 0.0000000293961 |
morex | ROO2 | 0.000140457 | 0.00116702 | 0.00937781 |
morex | NOD | 0 | 0.0474339 | 0.0152037 |
morex | RAC | 0.00208125 | 0.00168933 | 0.00983057 |
morex | INF1 | 0.000000000272047 | 0 | 0 |
morex | INF2 | 0.0000218851 | 0.000000124608 | 0.0000000134986 |
morex | CAR5 | 0.000000598812 | 0.00000808462 | 0.0000286165 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0.000935329 | 0.00637859 | 0.00580133 |
morex | LOD | 0.000254246 | 0.0218184 | 0.00348263 |
morex | PAL | 0.036382 | 0.043099 | 0.00124622 |
morex | SEN | 0.00000253048 | 0.00113774 | 0.0000431256 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os06g19470.2 | +1 | 0.0 | 775 | 536/841 (64%) | protein|WW domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g43210.1.p | +1 | 0.0 | 911 | 614/840 (73%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3386 bp)
>BART1_0-u51812.013 3386 150831_barley_pseudomolecules CTCAACCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTCT CCTCCTGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCTC CAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACTA CTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTCG GGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAAA GAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTCG TCAGGTGGGTTCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGGA ATGTAAATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTGG TTTGAGGCACATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCAG GCTGCCACTGTCAAAACTGGGTGTGTTCCTACCGATAAGAAGGAAAATCCTCTAGCGTTG CTTGGGCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGGT GAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGTA ACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGAA GCATCTCAAGCCGATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGTT GCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTCA TCTGGCATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACAA AGTAATCAGTGTTACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGAT GGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATATG GGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCCT AGTGATGTATCTGTTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCAT GATGCTTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTTG CAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACAT GTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTGT AATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCAC CTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGGA TATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACCC TCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGAA AATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGCA GCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGTC GATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCCT TCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCAA CAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCCA CCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTCA TTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATATG CTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTAT ATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTTG TCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTCT TATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGGA TACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTCA GCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAAG GAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAACA GTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGT ACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGT CTGGTGGATAAGGCAGAGCAATCTGTTTACATGGTAATTGGTAAGGCTTAAGACAAGTGG AAAGCTGCAAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAG TACCTAGAAAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGT GGAGAAGCTAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTA AAACGCAAAAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCC GAACAACACAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGG CAGGCATACATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAG ACTACTTGGGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGC TCTGTAGATATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTC TTTTATTTTCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCA TCCCTTGTAAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTG CTGACCAAGGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCA TTTGCTTTCAAAACAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTC TCCAATTATTTAACATTAGAAAGAAA
Protein Sequence (583 aa)
>BART1_0-u51812.013 583 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKVPRTKKRPVAVASSLRSNKKVSSLVDKAEQSVYMVIGKA