- Transcript BART1_0-u51812.005
- Transcript IDBART1_0-u51812.005
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679395 | + |
| chr7H | 2 | 140680417 | 140680127 | + |
| chr7H | 3 | 140680803 | 140680682 | + |
| chr7H | 4 | 140681781 | 140681165 | + |
| chr7H | 5 | 140683083 | 140681885 | + |
| chr7H | 6 | 140684053 | 140683422 | + |
| chr7H | 7 | 140684216 | 140684143 | + |
| chr7H | 8 | 140684701 | 140684566 | + |
| chr7H | 9 | 140685505 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.958716 | 0.967309 | 0.792106 |
| morex | LEA | 0 | 0.000000138308 | 0 |
| morex | EPI | 0.734051 | 0 | 0.541778 |
| morex | ROO | 0 | 0.0000210893 | 0.193214 |
| morex | ROO2 | 0.0113635 | 0.0526324 | 0.213502 |
| morex | NOD | 0 | 0.35055 | 1.16188 |
| morex | RAC | 0.35557 | 0.345065 | 1.89523 |
| morex | INF1 | 0.00000433455 | 0.0000495609 | 0.00000178903 |
| morex | INF2 | 0.114423 | 0.000101872 | 0.000375282 |
| morex | CAR5 | 0.00124268 | 0.033764 | 0.149887 |
| morex | CAR15 | 0.00189312 | 0.0000958609 | 0 |
| morex | LEM | 0.222501 | 0.958629 | 0.613078 |
| morex | LOD | 0.211521 | 1.05298 | 0.303999 |
| morex | PAL | 2.61069 | 2.04683 | 0.174062 |
| morex | SEN | 0.00110562 | 0.420732 | 0.00510295 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.1 | +2 | 0.0 | 631 | 436/693 (63%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 749 | 503/695 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3890 bp)
>BART1_0-u51812.005 3890 150831_barley_pseudomolecules GCTCAACCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTC TCCTCCTGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCT CCAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACT ACTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTC GGGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAA AGAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTC GTCAGGTGGGTTCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGG AATGTAAATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTG GTTTGAGGCACATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCA GGCTGCCACTGTCAAAACTGGGTGTGTTCCTACCGATAAGAAGGAAAATCCTCTAGCGTT GCTTGGGCAATATAGTGATGATGAAGAAGAGGATGAAGTAGCAACAGATCAACCCAATGG TGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAAGGTTTTTAACGATCATGGTGATGT AACTGGGGATAAAGGCGATGCAGATAGTGAACTGCCTGCTTCTGTTAGTGTTCAGCAGGA AGCATCTCAAGCCGATGATGTAAAAACTATCACAGAAAATGTTGCTGAGGAATTTACTGT TGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGACAGTAATGGAAGCTGTCCCAGATTC ATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAATTGGAAGGCTATAATGCATGAACA AAGTAATCAGTGTTACTACTGGAACACAGTTACAGGAGAAACTTCTTGGGAGATTCCTGA TGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCACTTCTGCATCTGTGCCTACTCATAT GGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCCCCACAGCAATGTTGAAGCATATCC TAGTGATGTATCTGTTGGGAATGGCACAGCAACCTATACTGCTATGGGAACTTATACTCA TGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCATGAGTCAGTGGACATTGACCCCTT GCAGCTTGCAAAATATGGTGAGGATTTACTGCAAAGATTGAAGCTGCTGGAAAGGCCACA TGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGAAATTGAGATACGAGTAGCAGACTG TAATGCACTCTCCTCGTATGGATCTTCTTTACTTCCATTGTGGTTGCATGCTGAGGTGCA CCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGAAGCTAGCTACACTACCAGACATGG ATATCTGGAGACGGTGGATGCAGGACACAAAGCACCTAATGAAGCTAAAGTTATGGCACC CTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCACTCTGGGAATTGGTACTGGCGATGA AAATATTAAGGTTGAGGAACCATGTACAACATCATCTGCTCAGAACTCACAATGTGTGGC AGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGAAGATATGGACGTGGACATGGAGGT CGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCACTTCTATGCCAAATAAGGAGCATCC TTCATCAGAGCAAGTACGATCACCAGCTTTGTCATCATTGGAAGACTCTGCTCCTCCCCA ACAGGATAATGACATTCCTCCTCCACCACCACCACCAGAAGAGGAATGGATTCCACCTCC ACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCCTGAGCCTGAAGAGCCTGCTGTGTC ATTTGTTCATGCTGATACACTTCCTCAGCCATACGGAGGTCAAGCAAACTTGGGTTATAT GCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTACAGATGGCACAAATGCCAGCTACTA TATGCAAGCGAGCGATTCTCATATTCTTCAATCGCAGCAGCATTCTTACTACGCACCGTT GTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCACATCGATCCCCCCAGTACCAGGTTC TTATTATAGCTATCCTTCTGTCACTATGGCTGCCACTGAAGTAGCGGCTGAATCTTCTGG ATACTATGGTTCATCAACCTCTGCCATTTCTAGCGGTGAATTAGATAACAAAACAAGCTC AGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGTGGAGTCTGATAAAGTGATATCCAA GGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGGGGCAGCCTCAGCTTCAGCACCAAC AGTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCG TACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAG TCTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTC TGCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAA ATTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCGTTGAGACAT ACTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTG CACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTG ACTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTACATGG TAATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTCCTTATTAAT CTACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTGGAAAGCTGC AAAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGA AAGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGC TAAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAA AAGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACA CAAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATA CATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTG GGATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGA TATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTT TCCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGT AAGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAA GGAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTT CAAAACAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTA TTTAACATTAGAAAGAAAGATGATTTTTAAGTTTTTTTTCACACTTATTTTTTTTTTAAA CTTCAAAATGCCCTCGGACATCATTGGCTGGATTTTGTTTACATCATGCG
Protein Sequence (574 aa)
>BART1_0-u51812.005 574 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKVPRTKKRPVAVASSLRSNKKVSSLVDKVSP