- Transcript BART1_0-u51812.004
- Transcript IDBART1_0-u51812.004
- Gene IDBART1_0-u51812
Barley RTD
Exon Structure of BART1_0-u51812.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 140679678 | 140679395 | + |
| chr7H | 2 | 140680803 | 140680127 | + |
| chr7H | 3 | 140681781 | 140681165 | + |
| chr7H | 4 | 140683178 | 140681885 | + |
| chr7H | 5 | 140684053 | 140683422 | + |
| chr7H | 6 | 140684216 | 140684143 | + |
| chr7H | 7 | 140684701 | 140684566 | + |
| chr7H | 8 | 140685484 | 140684971 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.0000000449923 | 0.0000000129929 | 0.0000000100023 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 2.0234 | 0 |
| morex | ROO2 | 0 | 0.0000000239054 | 0 |
| morex | NOD | 0.430285 | 0.0000000252013 | 0 |
| morex | RAC | 0 | 0 | 0.000000000194472 |
| morex | INF1 | 3.36179 | 1.94456 | 0 |
| morex | INF2 | 29.3613 | 13.1921 | 22.8008 |
| morex | CAR5 | 9.73891 | 2.79896 | 3.49723 |
| morex | CAR15 | 1.23896 | 1.2598 | 1.07816 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0.000000000262693 | 0.0126177 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g19470.2 | +2 | 0.0 | 588 | 409/654 (63%) | protein|WW domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g43210.1.p | +2 | 0.0 | 702 | 475/656 (72%) | pacid=32799652 transcript=Bradi1g43210.1 locus=Bradi1g43210 ID=Bradi1g43210.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4228 bp)
>BART1_0-u51812.004 4228 150831_barley_pseudomolecules GCTCAACCGAAGCGCCCACCCCGGACACCCGCCTACCGCCAGCTCCCTCCACTTCGCCTC TCCTCCTGATTCGCACCGCTTCCCTTTTTGCCGTAAAACAAAACACCCCGACGTCACCCT CCAAACCCTAACCCTAGAATCTAGAAGACGTCCATCTCCACCCCCGGCGCGCGCCCGACT ACTCGGGGCAGCGGCGATGGGGAGGCGGAAGGAGCGCCGCCTGGCGGCCAAGGCGGCCTC GGGCCGTAGGGTCAAGCTCGACCTCTTCCTCGATCCTTCCCCCGGGGAGGCATCTACTAA AGAGGGAGTAGGGGAGGAAAACCGCGAGCAGCAAACTGGTGTTCCCACTTCACCATCTTC GTCAGGTGGGTTCAATCAATTTCCTTCCAAGGGATATGTAAAGACGGCACATGCCTATGG AATGTAAATTTGGTGGAAATTTGGAATTTTGTTCAAGCATGTGTATGCTCCAAATTTCTG GTTTGAGGCACATGTAGGGTTCCCGGCCTGCAAGGAACACTGAGTAAATTCTTCAGATCA GGCTGCCACTGTCAAAACTGGGTGTGTTCCTACCGGTAATTTCTCTTTTGGCAGCATCTG AGCGTGGGGATTTCAGGATGATTGTTGCCTCGGTTCGTATGTCTCTTTCTTTATATTGTA GCTCCTAACCTGGTTTTTTTAATTATTGCTGGGCTGCCATGGCACATTCTAAAGTAATTT TAACAAACTTGTTCTACTTTTATACCTGAGTCGATCTTCACATATACTTCAGAAAATAGT GCAATATATATTGTCACATGAAAGCTTTCACGTTTCTAATGATGAATCTGTTTTTTCAGA TAAGAAGGAAAATCCTCTAGCGTTGCTTGGGCAATATAGTGATGATGAAGAAGAGGATGA AGTAGCAACAGATCAACCCAATGGTGAAACTAAGGGAAGTTCAACTGATGCAAGTGCCAA GGTTTTTAACGATCATGGTGATGTAACTGGGGATAAAGGCGATGCAGATAGTGAACTGCC TGCTTCTGTTAGTGTTCAGCAGGAAGCATCTCAAGCCGATGATGTAAAAACTATCACAGA AAATGTTGCTGAGGAATTTACTGTTGCCCCTGAGCCAACTCTGGAAAATGAGTGTGTGAC AGTAATGGAAGCTGTCCCAGATTCATCTGGCATGCAAATCGTGGGTGACATTGGTGGGAA TTGGAAGGCTATAATGCATGAACAAAGTAATCAGTGTTACTACTGGAACACAGTTACAGG AGAAACTTCTTGGGAGATTCCTGATGGATTAGCTTCGGGGGTTGCTGGTGATGGAGTCAC TTCTGCATCTGTGCCTACTCATATGGGCTACTCTGTAGAAGCTCAAGCACATGTCCTTCC CCACAGCAATGTTGAAGCATATCCTAGTGATGTATCTGTTGGGAATGGCACAGCAACCTA TACTGCTATGGGAACTTATACTCATGATGCTTATGCTTACACTGGAGCCGTCGCTAGTCA TGAGTCAGTGGACATTGACCCCTTGCAGCTTGCAAAATATGGTGAGGATTTACTGCAAAG ATTGAAGCTGCTGGAAAGGCCACATGTTGCCATTGACAGTCTTGAGTTGATAAAAAGAGA AATTGAGATACGAGTAGCAGACTGTAATGCACTCTCCTCGTATGGATCTTCTTTACTTCC ATTGTGGTTGCATGCTGAGGTGCACCTTAAGCAACTAGAACTTTCAGTTTCCAAGTTTGA AGCTAGCTACACTACCAGACATGGATATCTGGAGACGGTGGATGCAGGACACAAAGCACC TAATGAAGCTAAAGTTATGGCACCCTCCGAGGGTGAGCATTTGAAAGTTGATGTTAGCAC TCTGGGAATTGGTACTGGCGATGAAAATATTAAGGTTGAGGAACCATGTACAACATCATC TGCTCAGAACTCACAATGTGTGGCAGCAGCTATTTTAAGAGTTGAATCAGACAGTGATGA AGATATGGACGTGGACATGGAGGTCGATGAAGAAGGTGTTGAAGAGCACGGCGGATTCAC TTCTATGCCAAATAAGGAGCATCCTTCATCAGAGCAAGTACGATCACCAGCTTTGTCATC ATTGGAAGACTCTGCTCCTCCCCAACAGGATAATGACATTCCTCCTCCACCACCACCACC AGAAGAGGAATGGATTCCACCTCCACCACCGGAGAATGAACCAGCTCCTCCACCTCCTCC TGAGCCTGAAGAGCCTGCTGTGTCATTTGTTCATGCTGATACACTTCCTCAGCCATACGG AGGTCAAGCAAACTTGGGTTATATGCTTCCAGGAATGGAGTACTATCCCGCTTCTGGTAC AGATGGCACAAATGCCAGCTACTATATGCAAGCGAGCGATTCTCATATTCTTCAATCGCA GCAGCATTCTTACTACGCACCGTTGTCTGCAAGTGGCGTATCTATTCCTGTTGAGACCAC ATCGATCCCCCCAGTACCAGGTTCTTATTATAGCTATCCTTCTGTCACTATGGCTGCCAC TGAAGTAGCGGCTGAATCTTCTGGATACTATGGTTCATCAACCTCTGCCATTTCTAGCGG TGAATTAGATAACAAAACAAGCTCAGCCTCCCTTGTTTCAAATAGTAATGTGAATCCTGT GGAGTCTGATAAAGTGATATCCAAGGAGCCTACAGTTGTTTCTTTGAGCCAATCAGTAGG GGCAGCCTCAGCTTCAGCACCAACAGTACATGGTAGTTCTACTCTAGCTTCTACTAGTAC CACTAATCAGACTAAAGGTAATTTATTATTCTTTGCAAGGATACTTAATGTTACTAGCTC GTACATGGTAGTTCTACTCTAGCTTCTACTAGTACCACTAATCAGACTAAAGTTCCTCGT ACTAAGAAGCGACCTGTTGCTGTTGCATCATCACTGAGATCTAATAAGAAGGTCTCAAGT CTGGTGGATAAGGTATCTCCCTGACCTCCCAAAGCTGCTGTTAAAATAGTGACCATCTCT GCTCTCTCCTACCCTACCATCAACTGCTCCCAAGTGTGGTGCTTGACATCAATGAAGAAA TTTAACTCACTGCATGATATGCATTATTGCTAATGGTGTATACTTAGTCGTTGAGACATA CTCTTGGTTATGTTATTAGCAAGAGAGCACACTGTCCTCGGCCAGTTTATTTCGTGGTGC ACAACATTGGTCCTCCAGAAAAAAAACTCATGCAAGTGGGAGTATGGCCGTGTTTCCTGA CTATTTCGTCTCATGTTTATCATTTCTTATTTTAAAGGCAGAGCAATCTGTTTACATGGT AATTGGTAAGGCTTAAGACAAGGTGAGTGTTGATGTATAATGATTGTTTCCTTATTAATC TACCTTTACTAAAGCGACCTTTTATTTTATTTTATTTCACTATTACAGTGGAAAGCTGCA AAAGAGGAGCTTTGTGATGAAGAGGAAGAGGAGCCTGAAGATGCTTTGGAGTACCTAGAA AGGAAACGTCGGAAGGAAATAGATGGGTGGCGTAAGCAACAAATAGCTAGTGGAGAAGCT AAGGAAAATGCTAATTTTGTTCCCCTTGGCGGTAACTGGCGTGACCGTGTAAAACGCAAA AGAGCTGAAGCAAAGAAGGAAGCAAAGACTGAATCTGTTTGTGCAGCTGCCGAACAACAC AAAGGAGAGCCTGATCTCTCAGAGCTTTCCAAGGGTCTCCCTTCTGGGTGGCAGGCATAC ATAGACGAGTCTACGAAGCAAGTGTACTATGGGAACAACCTCACTTCCGAGACTACTTGG GATCGGCCTAGCAAATAAAGATTGAACTAGTTGAAGATGGTCCAGTTTTGCTCTGTAGAT ATCCTCATACATCTATACGTTGCCTGTCTGGTTATGAGGCTGTATTGTTTCTTTTATTTT CCACTGGGAGATCGTAGCAGGAAGGATACTTCATTTTGGTATATAGAGGCATCCCTTGTA AGAGTGGCAACTTGAGATCGAATTACTGAAGCAAAAAATACTAGTTAGTTGCTGACCAAG GAAAAATGTGCCTTGTTAAGTGGTGGGAGTCTTTACCTCGATCTGATACCATTTGCTTTC AAAACAATGTCAATTATATTCGATTTTAGGTTGTGCTAAATTCTAGACTTCTCCAATTAT TTAACATTAGAAAGAAAGATGATTTTTAAGTTTTTTTTCACACTTATTTTTTTTTTAAAC TTCAAAATGCCCTCGGACATCATTGGCT
Protein Sequence (565 aa)
>BART1_0-u51812.004 565 150831_barley_pseudomolecules MEAVPDSSGMQIVGDIGGNWKAIMHEQSNQCYYWNTVTGETSWEIPDGLASGVAGDGVTS ASVPTHMGYSVEAQAHVLPHSNVEAYPSDVSVGNGTATYTAMGTYTHDAYAYTGAVASHE SVDIDPLQLAKYGEDLLQRLKLLERPHVAIDSLELIKREIEIRVADCNALSSYGSSLLPL WLHAEVHLKQLELSVSKFEASYTTRHGYLETVDAGHKAPNEAKVMAPSEGEHLKVDVSTL GIGTGDENIKVEEPCTTSSAQNSQCVAAAILRVESDSDEDMDVDMEVDEEGVEEHGGFTS MPNKEHPSSEQVRSPALSSLEDSAPPQQDNDIPPPPPPPEEEWIPPPPPENEPAPPPPPE PEEPAVSFVHADTLPQPYGGQANLGYMLPGMEYYPASGTDGTNASYYMQASDSHILQSQQ HSYYAPLSASGVSIPVETTSIPPVPGSYYSYPSVTMAATEVAAESSGYYGSSTSAISSGE LDNKTSSASLVSNSNVNPVESDKVISKEPTVVSLSQSVGAASASAPTVHGSSTLASTSTT NQTKGNLLFFARILNVTSSYMVVLL