barSeed - Barley Seed Development Database

Probe CUST_9765_PI390587928

Source Contig U35_354

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9765_PI390587928	Hv_44K_v2	TCCAACACCTGTGTCATATTTATCTTTACCTAATAATAAAGAGGCTATTAATTCCGTCGG	670	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252627.1	797	2e-24	719 - 778	100	60 / 60	plus	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC35392 ABC36259 ABC45389 ABC45928
MLOC	AK249868.1	737	2e-24	659 - 718	100	60 / 60	plus	ABC00308 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC26838 ABC27839 ABC35392 ABC36259 ABC45389 ABC45928
Harvest21	ABC00904	838	3e-25	758 - 817	100	60 / 60	plus
Harvest35	U35_354	757	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (757 bp)

>U35_354 757 Hv_44K_v2
GGCTACCACCGTCGCACCCTTCCGGGGCTAAGTCCCAGCCGGTCTCCCCGTCAGCCGCCG
CTCCAGCGCCAGCCTCGGCAGGGTCAGCAATGGCGGAAGGATCAGGTGCATGCAGGTGTG
GCCGATTGAGGGTATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCCCTCACCACGGA
GGCCCTCCTGAAGCAGGTTGACTACCTGATCCGCTCCAAGTGGGTGCCCTGCCTCGAGTT
CAGCAAGGTTGGCTTCGTCTTCCGTGAGCACAACAGCTCCCCCGGGTACTACGACGGCCG
ATACTGGACAATGTGGAAGCTGCCTATGTTCGGATGCACCGACGCCACACAGGTGCTTAA
CGAGGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCTTACGTCCGTATCATCGGCTTCGA
CAACCTGCGGCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAGGCCACCGGGTTGCGAGGA
GTCCGGCAAGGCATAAACTACGAGGTGAAACAATGGCCTATGTCGTATGAAGGTCTTCTG
TGAACTTCACTTTTGTCCATGACTCTGCTTTCCGACTAGAGCATAATTTTCTTCTCTATG
ATCTGTGTATGTACGAGCATAGGTTGTGCAGCATATATGCATATGTAAATTCTAGCACCG
CCTACACATATCCAACACCTGTGTCATATTTATCTTTACCTAATAATAAAGAGGCTATTA
ATTCCGTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_354 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19470.2	176	2e-95	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g08800.1	175	5e-106
Arabidopsis v10	AT1G67090.1	180	8e-74	\| Symbols: RBCS1A \| ribulose bisphosphate carboxylase small chain 1A \| chr1:25048465-25049249 REVERSE LENGTH=180