- Probe CUST_8933_PI390587928
- Source Contig U35_1000
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8933_PI390587928 | Hv_44K_v2 | GACTGCACTCCTTGGCTGCTACCGACCAAAAATTTTACAAATCTGTCTACATGTTTTGTT | 928 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7663.1 | 229 | 6e-24 | 155 - 213 | 100 | 59 / 59 | minus | ABC03063 ABC03070 ABC03074 ABC32612 |
| MLOC | AK360294 | 2129 | 3e-22 | 2069 - 2127 | 98 | 58 / 59 | plus | ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 |
| MLOC | AK365517 | 2421 | 3e-22 | 2338 - 2396 | 98 | 58 / 59 | plus | ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 |
| MLOC | AK369982 | 2078 | 3e-22 | 1990 - 2048 | 98 | 58 / 59 | plus | ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 |
| MLOC | MLOC_79668.1 | 281 | 3e-22 | 22 - 80 | 98 | 58 / 59 | minus | ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046 |
| MLOC | MLOC_52931.1 | 320 | 3e-22 | 212 - 270 | 98 | 58 / 59 | plus | ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046 |
| MLOC | MLOC_46361.1 | 1131 | 3e-22 | 1004 - 1062 | 98 | 58 / 59 | plus | ABC03062 ABC03063 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046 |
| JLOC1 | JLOC1_40596.1 | 424 | 3e-24 | 259 - 317 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_358.1 | 203 | 2e-21 | 125 - 181 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC03070 | 1039 | 3e-25 | 928 - 987 | 100 | 60 / 60 | plus | ABC03070 |
| Harvest21 | ABC03074 | 730 | 1e-24 | 532 - 590 | 100 | 59 / 59 | plus | ABC03074 |
| Harvest21 | ABC03067 | 1427 | 5e-23 | 1329 - 1387 | 98 | 58 / 59 | plus | ABC03067 |
| Harvest21 | ABC32612 | 356 | 8e-21 | 212 - 269 | 97 | 57 / 59 | plus | ABC32612 |
| Harvest35 | U35_1000 | 1040 | 3e-25 | 929 - 988 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1005 | 730 | 1e-24 | 532 - 590 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_1004 | 1415 | 5e-23 | 1270 - 1328 | 98 | 58 / 59 | plus |
Contig Sequence (1040 bp)
>U35_1000 1040 Hv_44K_v2 GACTTCGAACCAGCAGGAAGAGGCAGGACGGAGGGAGTTCCACCGCGATCGCGAACCAGC AGGTGAGCCGGCGGCCATGGCACGCCCAGATCCGCCCTCCTTTGGCCGTCGTCGTCGATC TCCTCTGCGCCTACCGCCGGATCCACCTCAGGTGCACCACCTAGGAGACCATGGCTCCAT TTGCTTCTTCTGCTGTCCCGGTTCTCCAACCCTAGTGCCTGCCGACGCCATGGAAGTGGA GCAGATGAGAGAGACCATTTGGTTTGAGGTGACTATTTTTGGCAAGGGAAGCAATGTCAC AAGAGCAGGGGATGTCCCTCTCGGAGCGGAGCAGTATGCCCACCGCTCCGGTACCTTTTT GTGCTATGACGAGTGTGTCACTGCTGTCGGCATCAAGATGAGAGAGATTATTTGGTTTGA GGTGACCTCCCAGGAAGCAAAAAGGGCGTGGCAAGGGAAGGAATGTTACAAGAGAAACGG ATGGCCCCTCTCGGAGCAGAGCAGAGCAGTATGCCCACCACTCCAGCACCTTTTTCTGCT ACGAGAAGTCCTTCACCGCTGTCGGCATCAAGCTGCCCCTGGTTCGATTCCTCCCAAGAG CGGATCTGCGCCAAAGGGCAACTTTTCTTGCTCACGCGGATAACGGCCACTGGCTGCTCC ACAACAACGACAAGCACGACGGCCTTGACGAAGTTGTCCGTCGTCGACACTGAAGAGCAA GCCCGCCTTCTCCAGACTTGCATGACGGGAGGGGAGCGGGCGGCCACTGCCTCCTTCATG CTGCCGATACCGAAGAGCAAGCCCGCCTTCTCCAGAGTTTGCAAAGGAGCTTTACGTTCA GTGGCGGACACTACTTTGATCCTATGATAGATGGTTCTTCATAATGTGATAGTGTATAGG CCTTCTTCCTGGGGACCTACTGCTCAACGACTGCACTCCTTGGCTGCTACCGACCAAAAA TTTTACAAATCTGTCTACATGTTTTGTTTCTATATATTTACAAATATCCTATCAATCCAT TTTTAAAAAAAAAAAAAAAA
Homology of Contig U35_1000 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |