barSeed - Barley Seed Development Database

Probe ABC03063

Source Contig ABC03063

barSeed

Links

Affymetrix Source Sequence (663 bp)

>ABC03063 663
GTGCCTCTTCCCTGGGCGCCACTCTCCCGCTGCTCCTCTGACCCAAGTGCCGACAAAATG
GGCTCGCCAAGGCACACTTCATGGACGAGGAGGACCACCCACGACGATGAACATGTGTGA
CCTCACCCCCGAGCCTGACGAGCTCGACAACGACAACATCGTCAACCTTGATCCTCAACA
ACAACGACAAGCACGACGGCCTTGACGAAGTTGTCCGCCGCCGACACCGAAGAGCAAGCC
CGCCTTCTCCAGACTTGCATGACGGGAGGGGAGGGGGCGGCCACTGCCTCCTTCACACAC
CAAGCCGCTGACACCGAAGAGCAAGCCCGCCTTCTCCAGAGTTTGCAAAGGAGCTTTACG
TTCAGGGCATGGTTGTTTGCAGAGAGTGGCGGACACTACTTTGATCCTTTGACAGATAGT
TCTTTATAATGTGATAGTGTATAGGCCTTCTTCCTGGGGACCTACTGCTCAACTACTGCA
CTCCTTGGCTGCTACTGACCAAAATTTTTACAAATATGTCTACATGTTTTGTTTCTATAT
ATTTACAAATATCCTATCAATCCATTTTTAAAATGGATGGGCGTGGCAACGCGCGCCTTT
CATGATCTAGTATGTTTTGTAACCTGTGCAAATATCAGAAAAAAATACATAATATTCATA
CTA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360668	1519	0.0	1009 - 1519	100	511 / 511	CUST_8922_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03074 ABC32612
MLOC_32655.1	764	0.0	1 - 447	96	431 / 447	CUST_8922_PI390587928	ABC03062 ABC03063 ABC03067 ABC03070 ABC03074 ABC32612 ABC49982
AK371872	1144	0.0	711 - 1142	96	416 / 432	CUST_30297_PI390587928 CUST_8920_PI390587928 CUST_8922_PI390587928	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC49982
AK359678	1211	1e-175	839 - 1211	97	360 / 373	CUST_5079_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046 ABC49982
MLOC_29724.1	369	5e-175	1 - 369	97	357 / 369	CUST_8922_PI390587928	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
AK363837	4543	4e-161	4206 - 4543	97	328 / 338	CUST_8922_PI390587928 CUST_32915_PI390587928	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_62063.1	348	4e-156	14 - 348	96	323 / 335	CUST_8922_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046
AK361403	1405	5e-155	1063 - 1404	96	327 / 342	CUST_30297_PI390587928 CUST_8922_PI390587928 CUST_8920_PI390587928	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC49982
MLOC_29408.1	323	8e-153	3 - 322	97	311 / 320	None	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_27292.1	443	4e-151	1 - 338	95	323 / 339	CUST_8922_PI390587928	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
AK358808	1074	1e-150	738 - 1074	95	322 / 338	CUST_5079_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_79668.1	281	2e-129	1 - 281	96	271 / 281	CUST_8933_PI390587928 CUST_8922_PI390587928 CUST_41299_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046
MLOC_31850.1	477	2e-124	1 - 281	95	268 / 281	None	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_52931.1	320	2e-123	47 - 319	96	262 / 273	CUST_8933_PI390587928 CUST_8920_PI390587928 CUST_8922_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046
MLOC_27622.1	287	3e-122	6 - 287	95	269 / 284	None	ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_59230.1	252	2e-113	1 - 252	96	243 / 253	CUST_8922_PI390587928 CUST_8920_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
AK369982	2078	1e-76	1620 - 1791	97	167 / 172	CUST_8933_PI390587928 CUST_8922_PI390587928 CUST_8920_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
AK365517	2421	5e-75	1969 - 2140	97	166 / 172	CUST_8922_PI390587928 CUST_41299_PI390587928 CUST_8933_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_78678.1	298	2e-108	59 - 298	96	232 / 241	None	ABC03062 ABC03063 ABC03070 ABC03074
MLOC_46361.1	1131	2e-103	898 - 1131	96	224 / 234	CUST_8933_PI390587928	ABC03062 ABC03063 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046
MLOC_29017.1	309	2e-103	1 - 204	100	204 / 204	None	ABC03063
MLOC_77842.1	250	9e-98	1 - 206	98	202 / 206	None	ABC03062 ABC03063 ABC03070 ABC03074
AK360294	2129	1e-76	1699 - 1870	97	167 / 172	CUST_19852_PI390587928 CUST_8920_PI390587928 CUST_8922_PI390587928 CUST_8933_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_61163.1	246	1e-95	28 - 241	96	207 / 215	CUST_25347_PI390587928	ABC03062 ABC03063 ABC03065 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046
MLOC_77191.1	284	9e-93	82 - 284	97	197 / 203	None	ABC03062 ABC03063 ABC03070 ABC03074
MLOC_7663.1	229	7e-89	25 - 229	96	196 / 205	CUST_41301_PI390587928 CUST_8933_PI390587928	ABC03063 ABC03070 ABC03074 ABC32612
MLOC_27552.1	343	4e-86	134 - 339	95	195 / 206	None	ABC03062 ABC03063 ABC03066 ABC03067 ABC03074 ABC32612
AK358750	2290	1e-76	1885 - 2056	97	167 / 172	CUST_8922_PI390587928 CUST_41299_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
MLOC_62063.2	182	2e-84	1 - 179	98	176 / 179	CUST_8922_PI390587928	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046
AK364453	2668	1e-76	2273 - 2444	97	167 / 172	CUST_8920_PI390587928 CUST_41296_PI390587928 CUST_8922_PI390587928 CUST_19852_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
MLOC_58527.1	255	9e-83	1 - 188	96	181 / 188	None	ABC03062 ABC03063 ABC03066 ABC03067 ABC03074 ABC32612
AK364024	2269	3e-53	1898 - 2027	96	125 / 130	CUST_19852_PI390587928	ABC03063 ABC03064 ABC03066 ABC03067 ABC32612
AK249100.1	2998	1e-66	2837 - 2996	96	153 / 160	CUST_19852_PI390587928 CUST_41296_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
AK359307	2615	1e-76	2191 - 2362	97	167 / 172	CUST_41296_PI390587928 CUST_19852_PI390587928	ABC03063 ABC03064 ABC03066 ABC03067
MLOC_31659.1	358	7e-74	192 - 358	97	162 / 167	None	ABC03062 ABC03063 ABC03066 ABC03067 ABC03074 ABC32612
MLOC_41290.1	375	5e-65	228 - 375	97	144 / 148	None	ABC03063 ABC03066 ABC03067
MLOC_32733.1	144	3e-58	1 - 144	95	137 / 144	None	ABC03062 ABC03063 ABC03066 ABC03067 ABC03074 ABC32612
MLOC_27084.1	503	2e-54	373 - 503	96	126 / 131	None	ABC03063 ABC03074 ABC41046
AK376074	1180	9e-53	688 - 815	96	123 / 128	None	ABC03062 ABC03063 ABC03070 ABC03074 ABC49982
MLOC_23735.1	514	9e-53	303 - 430	96	123 / 128	None	ABC03062 ABC03063 ABC03070 ABC03074 ABC49982
MLOC_23735.2	508	9e-53	297 - 424	96	123 / 128	None	ABC03062 ABC03063 ABC03070 ABC03074 ABC49982