barSeed - Barley Seed Development Database

Probe ABC03064

Source Contig ABC03064

barSeed

Links

Affymetrix Source Sequence (1148 bp)

>ABC03064 1148
GAAACCCCACGCAGACACAGCTCCGCTCCGCCCTCACGCACCTCACTCCGGCCACCTCCT
CCCACCCACCGCCGCCGGCGGCGCCATGGAGGTCGGCGGCGAGGAGTTCGCGGTCGGCGT
GGTGATCTCCGCGAAGACCACCCTCGGGGAGGAGTTCGAGGGCCAGATCGTCTCCTTCGA
CCGCCCGAGCAACCTCCTCGTCATCCAGGAGGGCGTGGGCAGGGCGGAGAGGGGCGAGCG
GCGGAACGTGAGGGTGCTCAAGGCCAACTACATCCAGGAGTTCTCCGTCGTCGGCAAGTA
CGACGACCCGCTCGACCCGGCTGGCTGTGTGCTCGACCTCGCCGCCATCCACGCCAGGGA
GGAGGCCGCCCTCAGGCAAGCTGAGATTGAAGCTGAGAGAATTGGTGTTGGTGTCACCCC
AGAAGCTCAAAGATTATTTGATGCATTGTCAAAGACGCTTCCAGTTCATTGGGACAAGAC
CGACATTGTTGTAATGAAGGAGGTTCGTGTATGCAGTCCCTACCTGCCTGAAAATGTCAG
CGGCGGAACATCAGCTGCTAATGAACGGGTTAAGAAAGTGCTGGACTTTGAGAGGAAAAG
ACAACATGTGCGTGTACCTGGCCAATTCTAACTTATTCGACTTGACAATTTTTCACCTCA
ACTCCTGCTGTGATCTGTTTCTAAATCCGACCTTATTCATTCAGTTTCGTCAGTTGAATC
TTTTAAAAATCTGTTTCAGCATGTTGTTCTCACAAACTACCACACCAGCTAGCTTATTGA
TACTCTGCGTTAGATGCCATATGTGGTGGTGGTGAATAATTGCAGCACACCGTGCTGATA
ATTCATATGGCTGATAGTGAAAGGTTGTGTGACTGAAGCAAACCAAGGTAAGAAAATAGA
TTGGTGGCACTGAAAGAATAGGAAGTTGTATAACAAACTAAGAAAAGATGCGGAGCCAAG
GCAAAACTGAAAATTAGTCTGTCAGACTTTGTATTGCTTTTCCTGGTGGAATAATATTTC
CAGCTTGTGCTGTTGTATTCTTTTGCTTCCCTTGCAATCCGTGGTATTGGAGATGCGAGG
CGGAATCGTGTAGCTTTATTGGTGAGATAATATTATGATGTGGTTCTGTTCAAAAAAAAA
AAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250288.1	1150	0.0	20 - 1150	99	1128 / 1131	CUST_8932_PI390587928	ABC03064
MLOC_57646.1	1104	0.0	1 - 817	99	814 / 817	CUST_8932_PI390587928	ABC03064
AK369982	2078	1e-177	4 - 363	98	353 / 360	CUST_8920_PI390587928 CUST_8933_PI390587928 CUST_8922_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
AK358750	2290	6e-171	4 - 363	97	349 / 360	CUST_8922_PI390587928 CUST_41299_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
AK365517	2421	6e-171	14 - 369	97	346 / 356	CUST_8922_PI390587928 CUST_8933_PI390587928 CUST_41299_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC_23909.3	560	2e-156	47 - 403	95	338 / 357	None	ABC03064
MLOC_31370.2	279	4e-128	1 - 279	96	270 / 280	None	ABC03064
MLOC_26565.1	430	7e-121	1 - 254	98	248 / 254	None	ABC03064
MLOC_26565.2	305	9e-120	1 - 252	98	246 / 252	None	ABC03064
MLOC_57072.2	440	4e-98	231 - 440	98	206 / 211	None	ABC03064
MLOC_41240.1	200	2e-92	1 - 200	98	195 / 200	None	ABC03064
MLOC_41072.1	319	3e-89	126 - 319	97	189 / 194	None	ABC03064
MLOC_27060.1	196	1e-88	1 - 196	97	190 / 196	None	ABC03064
AK364024	2269	7e-81	345 - 518	98	171 / 174	CUST_19852_PI390587928	ABC03063 ABC03064 ABC03066 ABC03067 ABC32612
AK360294	2129	9e-80	346 - 523	97	173 / 178	CUST_19852_PI390587928 CUST_8933_PI390587928 CUST_8922_PI390587928 CUST_8920_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
AK364453	2668	2e-81	411 - 585	98	172 / 175	CUST_8920_PI390587928 CUST_8922_PI390587928 CUST_41296_PI390587928 CUST_19852_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
AK249100.1	2998	2e-81	346 - 520	98	172 / 175	CUST_41296_PI390587928 CUST_19852_PI390587928	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
AK359307	2615	2e-81	408 - 582	98	172 / 175	CUST_41296_PI390587928 CUST_19852_PI390587928	ABC03063 ABC03064 ABC03066 ABC03067
MLOC_29989.1	182	3e-84	1 - 182	98	178 / 182	None	ABC03064
MLOC_23909.1	1369	2e-66	1038 - 1212	93	163 / 175	None	ABC03064
MLOC_23909.2	578	7e-66	348 - 518	94	160 / 171	None	ABC03064
MLOC_57072.1	546	2e-76	231 - 404	97	169 / 175	CUST_19852_PI390587928	ABC03064
MLOC_41240.2	315	3e-75	143 - 315	97	167 / 173	None	ABC03064
MLOC_41946.1	306	3e-70	156 - 306	99	149 / 151	None	ABC03064
MLOC_41946.3	154	1e-69	5 - 154	99	148 / 150	None	ABC03064
MLOC_41946.2	202	1e-69	53 - 202	99	148 / 150	None	ABC03064
MLOC_31572.1	255	2e-66	1 - 162	95	154 / 162	None	ABC03064
MLOC_31370.1	395	1e-54	264 - 395	96	128 / 133	None	ABC03064
MLOC_391.1	115	6e-52	1 - 115	99	114 / 115	None	ABC03064