- Probe CUST_8920_PI390587928
- Source Contig U35_1007
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_8920_PI390587928 | Hv_44K_v2 | AATTCTTCATAATGTGATAGTGTATGGGCCTTCTTTCTGGGGACCTACTGCTCAACTACT | 721 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360294 | 2129 | 2e-24 | 2012 - 2071 | 100 | 60 / 60 | plus | ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 |
| MLOC | AK369982 | 2078 | 2e-24 | 1933 - 1992 | 100 | 60 / 60 | plus | ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 |
| MLOC | AK364453 | 2668 | 2e-24 | 2586 - 2645 | 100 | 60 / 60 | plus | ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612 |
| MLOC | AK361403 | 1405 | 9e-22 | 1309 - 1366 | 98 | 57 / 58 | plus | ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC49982 |
| MLOC | AK371872 | 1144 | 9e-22 | 957 - 1014 | 98 | 57 / 58 | plus | ABC03062 ABC03063 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC49982 |
| MLOC | MLOC_59230.1 | 252 | 9e-22 | 150 - 207 | 98 | 57 / 58 | minus | ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 |
| MLOC | MLOC_52931.1 | 320 | 9e-22 | 157 - 214 | 98 | 57 / 58 | plus | ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046 |
| JLOC1 | JLOC1_33958.1 | 257 | 5e-22 | 156 - 213 | 98 | 57 / 58 | plus | |
| JLOC1 | JLOC1_20771.1 | 305 | 6e-21 | 250 - 305 | 98 | 55 / 56 | plus | |
| JLOC1 | JLOC1_358.1 | 203 | 6e-21 | 68 - 123 | 98 | 55 / 56 | plus | |
| Harvest21 | ABC32612 | 356 | 2e-22 | 157 - 214 | 98 | 57 / 58 | plus | ABC32612 |
| Harvest21 | ABC03062 | 410 | 2e-22 | 302 - 359 | 98 | 57 / 58 | plus | ABC03062 |
| Harvest21 | ABC03066 | 1453 | 8e-21 | 1367 - 1428 | 95 | 59 / 62 | plus | ABC03066 |
| Harvest35 | U35_1007 | 806 | 3e-25 | 722 - 781 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1006 | 383 | 2e-22 | 275 - 332 | 98 | 57 / 58 | plus |
Contig Sequence (806 bp)
>U35_1007 806 Hv_44K_v2 GGATTCAAAACTCCATTTAGACAGTGCCCTCCTGGTGGAGACCAACACTAGCAGATGAGG AGCTGACATACCTGCGCAAGCTTGCACGTCCTTTGCCAACACATTTTGCTCTAGGATGAT TAAGTATTAACTGCTTCCGGCACCCTTACCTTCTTATGCATACATCACCTTAATGTTCCA CACAAAATAATGTAGAAGCACAAGAAAAGTGGTTCTTCAGATTCCTCGGTCCTCTGCAAT TTCTTTGCTACAAAAAATACAGCAGCTAGGAGGCATTGCCATTATGCATACATTGGTGGC CTGCCTCCATCAAACTGAACCTGAGCAACGGGTTTTGGCGGCTAATCTTCTCCTTCAATT GGATATGCTGGTACTTGTACAGTCAAGCAAGATTGAAGTTCCAATTGGGCCTCTTCCGTG GGCGCCACTCTTCCGCTGCTCCTCCGACCCAAGTGCCGACAAAATGGAGCTCGCCAAGGC ACACTTCATGGACGAGGAGGACCACCCACGACGATGAACATGTGTGACCTCACCCCCGAG CCTGACGAGCTCGACAACAACAACATCGTCAACCTTGATCTCGATGACAAGGTTGATCCC TAGCTTAGTGCCGACACCAAAGAGCTAAGCCCGCCTTCTCCAGAGTTTGCAAAGGAGCTT TACGTTCAGGGCATGGTTGTTTGCACAGAGTGGCGGACACTACTTTGATCCTTTGACAGA TAATTCTTCATAATGTGATAGTGTATGGGCCTTCTTTCTGGGGACCTACTGCTCAACTAC TGCACCCTTGGCTGCTACCGACCAAA
Homology of Contig U35_1007 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |