barSeed - Barley Seed Development Database

Probe CUST_7614_PI390587928

Source Contig U35_231

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7614_PI390587928	Hv_44K_v2	AGTTGCAGCCTCTTATCTGCATACAACTCGTGGGCAGCAACTTCTTCTTTACATACCAAC	382	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21799.4	709	2e-24	241 - 300	100	60 / 60	minus	None
MLOC	MLOC_21799.2	1426	2e-24	430 - 489	100	60 / 60	minus	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_21799.5	1573	2e-24	580 - 639	100	60 / 60	minus	ABC06549
MLOC	MLOC_21799.1	1275	2e-24	430 - 489	100	60 / 60	minus	ABC01488 ABC06549 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
JLOC1	JLOC1_15114.2	1454	8e-25	845 - 904	100	60 / 60	plus
JLOC1	JLOC1_15114.1	1686	8e-25	817 - 876	100	60 / 60	plus
Harvest21	ABC02146	799	3e-25	383 - 442	100	60 / 60	plus
Harvest35	U35_231	812	3e-25	383 - 442	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_231 812 Hv_44K_v2
CTCTGGCGACTCAGCCGTCTCTGCTCCCATCATCAACGCGCCTGACCTCCTCCCCCGCCT
CCCCACCGCTTTCGCCGTCGCCATTGTAAACATATATGGTTACAACCCCTCCCACCGGAC
CACTGGATGCCATGGGCGCCAGCAGGAAGCTGCAGTGTGAGATCGACCGCGTGCTCAAGA
AGGTCGAGGAGGGTGTCGACATGTTCGACTGCATCTGGAACAAGTTCTACGACACCGGGA
ATGCGAACCAGAAGGAAAAAATTCGAAGCCGACCTCAAGAAGGAGATCAAGAAGTTGCAG
CGCTACCGAGACGAGATCAACACCTGGATCCAATCTAGTGAGATCAAAGACAAGAAGCAT
GTATACATACAGGTATATAAGGAGTTGCAGCCTCTTATCTGCATACAACTCGTGGGCAGC
AACTTCTTCTTTACATACCAACAAGCCACCTCTGTTGCTTTCCTCCAGCAGTGCGTGCCC
CTCCTCTCGAGATCTTATCCGAGTTGCTCAGATCTGGTTGTAAGCAGCCAAGATGGTGAA
GATCTGCTGCATCGGAGCTGGCTACGTCGGCGGACCAACAATGGCTGTCATTGCCATCAA
GTGCCCAACAATTGAGGTGAAGTGTGAATCCAAGTCCGAAGTTGTGAAGCATATCAACAA
AGAGTAGCATATTATGTGTTGTAATTGTAGGCAGTAGTAGGCTTATTTGGGCTGTAGTAT
AATGTAACGATTGTAATAGACTAATGTAGTATTGTTTTGGACGAATTCCATTTGCTCTTT
GGATTGTTCAAAATAATGATTGTGTATGTGAT

Homology of Contig U35_231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None