barSeed - Barley Seed Development Database

Probe CUST_41299_PI390587928

Source Contig U35_997

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41299_PI390587928	Hv_44K_v2	GGACCTACTGCTCAACTACTGCACTCCTTGGCTGCTATCGACCAAAAATTTTACAAAAAA	1628	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365517	2421	7e-23	2321 - 2377	100	57 / 57	plus	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612
MLOC	AK358750	2290	3e-21	2237 - 2290	100	54 / 54	plus	ABC03062 ABC03063 ABC03064 ABC03066 ABC03067 ABC03074 ABC32612
MLOC	MLOC_79668.1	281	3e-21	41 - 97	98	56 / 57	minus	ABC03062 ABC03063 ABC03065 ABC03066 ABC03067 ABC03070 ABC03074 ABC32612 ABC41046
JLOC1	JLOC1_53049.1	240	2e-21	13 - 69	98	56 / 57	minus
JLOC1	JLOC1_40596.1	424	2e-21	242 - 298	98	56 / 57	plus
Harvest21	ABC03067	1427	1e-23	1312 - 1368	100	57 / 57	plus	ABC03067
Harvest21	ABC03074	730	6e-22	515 - 571	98	56 / 57	plus	ABC03074
Harvest21	ABC03062	410	6e-22	340 - 399	97	58 / 60	plus	ABC03062
Harvest35	U35_997	1699	3e-25	1629 - 1688	100	60 / 60	plus
Harvest35	U35_1004	1415	1e-23	1253 - 1309	100	57 / 57	plus
Harvest35	U35_1006	383	6e-22	313 - 372	97	58 / 60	plus
Harvest35	U35_1005	730	6e-22	515 - 571	98	56 / 57	plus

Contig Sequence (1699 bp)

>U35_997 1699 Hv_44K_v2
GAGAACACGTTATGGCATCCAATTTCTGTCCTGCTCATGTTTTTTCAGTTCCTATGCTCT
GTTCCGCAGAGGCTCTAATTGACTTAAGGTTACTGAGTGAGGGCAACCAGTTGTGTCCTA
CTAAAATTATGCTTTGATATAAATTTTAACGCAGAGTGCAATTTGTTTACTAATCAGCTA
TTTTAATTTCTCGATTACACAACTACCATGCTCGATTCAAGCCTCAAATTTTGTTTTTTG
GACTTCCCTTTTATCAGATAAAATCAGGAGGTCTAGTTGTTTGGACAAAAGGAGACGTTC
ATTTTGTTTACAGATGAAGTAGTTATCTAGAAAACATAAAACATCGTCAGAAGTCCATAG
CTGATATTCAGAGAGTTCCCCTTGAAAAATGCACTGCGCCTGAACCCCAGTGGAAACACG
AAAGCAACGCCGAGCCTTCAACAAATCATAATGATGATGCTCATGGTGTTTTCTGAGGGA
TTGATCCAAGCCTTGCTGTTCACGCATATGAAGAACCTGTCGAAGGAACAGTCTATGAGA
GAGAAGTCAACAGACTGTTGGACAGCTTGGGCCCTCGGTTTGTAGATTGGTGGTGGAACA
CGCCATTGCCTGTGGATGCTGATCTCCTTCCAGAAGTTGTTCCAGGATTCAAAACTCCAT
TTAGACAGTGCCCTCCTGGTGTGAGACCAACACTAGCAGATGAGGAGCTGACATACCTGC
GCAAGCTTGCACGTCCTTTGCCAACACATTTTGCTCTAGGATGATTAAGTATTAACTGCT
TCCGGCACCCTTACCTTCTTATGCATACATCACCTTAATGTTCCACACAAAATAATGTAG
AAGCACAAGAAAGCTGGTTCTTCAGATTCCTCGGTCCTCTGCAATTTCTTTGCTACAAAA
AATACGGCAGCTAGGAGGCATTGCCATTATGCATACATTGGTGGCCTGCCTCCATCAAAC
TGAACCTGAGCAACGGGTTTTAGCGGCTAAGCTTTTCCTTCAATTGGATATGCTGCAACA
ACAGATAAAATCAAAAATTGGGCCAAGAGCTGCTGTTGTTGTGAGCGCGCGACAGGAAAG
GAACGATGCCATAGTTGAGCTAAGAGAAAAACAGGGCAAAAAATTGGTGAACGACGCCAT
AGTTATAAAATAAAGAATGCATTCACCTAACCCTTTAAAACATTTTTAAAAGGAGGCTGC
ATGATATGAACAAAGGAATTTGGACACATTCATGTAGGTATACTGGTCTGATTATTAATT
TTATGTTAAATTTTCTCCACGTACTTGTACAGTCAAGCAAGATTGAAGTTCCAATTGGGC
CTCTTCCCTGGGCGCCACTCTCCCTCTGCTCCTTCATGGACGAGGAGGACCACCCACGAC
GATGAACATGTGTGACCTCACCCCCGAGCCTGACGAGCTCGACAACAACAACATCGTCAA
CCTTGATCTCGATGACAAGGTTGATCTCTAGCTTAGTGCCGACACCGAAGAGCAAGCCCG
CCTTCTCCAGAGTTTGCAAAGGAGCTTTACGTTCAGGGCATGGTTGTTTGCACAGAGTGG
CGGAAACTACTTTGATCCTTTGGAAGATAGTTCTTCATAATGTGATAGTGTATAGGCCTT
CTTTCTGAGGACCTACTGCTCAACTACTGCACTCCTTGGCTGCTATCGACCAAAAATTTT
ACAAAAAAAAAAAAAAAAG

Homology of Contig U35_997 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g27150.1	742	3e-60	protein\|chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g21852.1	731	4e-72
Arabidopsis v10	None