barSeed - Barley Seed Development Database

Probe CUST_40152_PI390587928

Source Contig U35_13677

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40152_PI390587928	Hv_44K_v2	ACTCCTGTGCCCTGAGACTGATTTGTTGTGAAATGCAAGTTATTAGATTGCACTTGTTTT	1548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12278.1	822	2e-24	464 - 523	100	60 / 60	minus	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32623 ABC32857 ABC49622 ABC49876
JLOC1	JLOC1_8232.1	666	8e-25	308 - 367	100	60 / 60	minus
Harvest21	ABC00249	599	3e-25	33 - 92	100	60 / 60	minus
Harvest21	ABC00024	2014	3e-25	415 - 474	100	60 / 60	minus	ABC00024
Harvest21	ABC00881	720	6e-22	651 - 704	100	54 / 54	plus
Harvest21	ABC01005	1813	2e-21	4 - 62	97	58 / 60	minus
Harvest35	U35_13677	1638	3e-25	1549 - 1608	100	60 / 60	plus
Harvest35	U35_38523	500	1e-23	87 - 146	98	59 / 60	minus
Harvest35	U35_13716	733	1e-23	654 - 713	98	59 / 60	plus

Contig Sequence (1638 bp)

>U35_13677 1638 Hv_44K_v2
GGGGCTCTCAGTCCCCCCCACCCCGCCGCCGCCCCCTCTCGGTTCCTTCTCCATCCTTCA
TTGGAGCTAAGCACGTTCAGCCATGGGTAAGGAGAAGACTCACATCAACATCGTGGTCAT
TGGACATGTCGACTCCGGCAAGTCGACCACCACTGGCCATCTGATCTACAAGCTTGGAGG
TATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCCGCTGAGATGAACAAGAGGTC
ATTCAAGTACGCCTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAGAGGGGTATCACCAT
TGATATTGCCCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCCCC
TGGTCACCGTGACTTCATCAAGAACATGATTACTGGTACCTCCCAGGCTGACTGTGCTGT
GCTCATCATTGACTCCACCACTGGTGGTTTTGAGGCCGGTATCTCCAAGGATGGCCAGAC
CCGCGAGCATGCCCTCCTTGCTTTCACTCTTGGAGTGAAGCAGATGATCTGCTGCTGTAA
CAAGATGGACGCCACCACACCCAAGTACTCGAAGGCCCGTTATGAGGAAATCGTCAAGGA
AGTCTCTTCCTACCTGAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCCAT
CTCTGGGTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGG
CCCTACCCTTCTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGGCCCTCGGACAAGCC
CCTGCGTCTTCCCCTTCAGGATGTTTACAAGATTGGTGGCATTGGAACTGTGCCCGTGGG
CCGTGTTGAGACTGGTGTCATCAAGCCTGGTATGGTTGTTACCTTTGGGCCCACTGGTTT
GACAACTGAGGTCAAGTCTGTTGAGATGCACCATGAGTCTCTCCTGGAGGCGCTTCCCGG
TGACAATGTCGGCTTCAATGTCAAGAACGTTGCCGTCAAGGATCTGAAGCGTGGGTTTGT
TGCATCCAACTCCAAGGATGACCCTGCCAAGGAGGCAGCCAACTTCACCTCCCAGGTCAT
CATCATGAACCACCCTGGTCAGATCGGCAATGGCTATGCCCCAGTGCTGGACTGCCACAC
CTCCCACATTGCTGTCAAGTTTGCTGAGCTGGTGACCAAGATCGACAGGCGATCTGGTAA
GGAGCTGGAGGCGCTGCCCAAGTTCCTCAAGAACGGTGATGCTGGTATCGTGAAGATGAT
TCCCACCAAGCCCATGGTTGTGGAGACCTTTGCCACCTACCCTCCTCTTGGCCGTTTTGC
CGTGCGTGACATGAGACAAACGGTTGCTGTCGGTGTCATCAAGGGCGTGGAGAAGAAGGA
CCCCACCGGTGCCAAGGTTACCAAGGCTGCCATCAAGAAGAAATAGGCGCTATCTAGCTG
AAGGATTTTGTTCGCGGTCATTGCTTTTGTTGCTTCAGACTCTTATCCCGGGCGAGCAAT
GATCTGTCTGTCGTTTAATTACTGTATTTCTATTCCTGCTTCTGCTAAACTCCTGTGCCC
TGAGACTGATTTGTTGTGAAATGCAAGTTATTAGATTGCACTTGTTTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

Homology of Contig U35_13677 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08050.1	448	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi4g12750.2	448
Arabidopsis v10	AT5G60390.1	449	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449