barSeed - Barley Seed Development Database

Probe CUST_38589_PI390587928

Source Contig U35_189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38589_PI390587928	Hv_44K_v2	GTTGCACGACCATGTTGTAAATTATGAGAATTTTGTGCAAAAGCATTGTTAGATTGTCCA	888	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58758.4	1225	7e-23	143 - 203	98	60 / 61	minus	ABC00006 ABC00347 ABC00432 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00949 ABC01012 ABC25177 ABC32758 ABC53022
JLOC1	JLOC1_38200.1	1066	4e-23	86 - 146	98	60 / 61	minus
Harvest35	U35_189	962	3e-25	889 - 948	100	60 / 60	plus

Contig Sequence (962 bp)

>U35_189 962 Hv_44K_v2
TGAGAACCCATCCATCACACACTTTTCTTAGCTCTACAATGGCGGCGACCACCACGTCCC
TCTCCTCCTCGACCTTTGCCGGCAAGGCAGTGAAGAATGTACCATCGTCAACTCTCTTCG
GCGAGGCTCGCGTCACCATGCGCAAGACTGCAGCAAAGGCGAAGCAGGTTTCCTCCAACA
GCCCATGGTATGGTGCTAACCGGGTGCTCTACCTCGGCCCACTCTCCGGTGATCCTCCGA
GCTACCTGACCGGTGAGTTCCCTGGTGACTATGGGTGGGACACCGCTGGGCTTTCAGCTG
ACCCCGAGACCTTCGCCAAGAACCGGGAGCTAGAGGTGATCCACTGTCGTTGGGCCATGC
TCGGAGCACTTGGTTGTGTCTTCCCGGAGTTGCTCGCCCGCAATGGCGTGAAGTTCGGCG
AGGCCGTTTGGTTCAAGGCCGGCTCCCAGATCTTTAGTGAGGGTGGTCTCGATTATCTTG
GCAACCCTAGCCTCGTCCATGCACAAAGCATCCTAGCTATTTGGGCATGCCAGGTCGTGC
TCATGGGTGCTGTTGAGGGGTACCGCATTGCCGGCGGCCCACTTGGCGAGATCGTCGACC
CACTCTATCCAGGCGGCAACTTCGACCCTCTTGGCCTAGCGGACGACCCTGAGGCATTTG
CCGAACTCAAGGTGAAAGAGATCAAGAATGGACGTCTGGCCATGTTCTCAATGTTTGGCT
TCTTTGTGCAAGCTATCGTCACAGGCAAGGGCCCTCTTGAGAACCTCGCTGACCACATTG
TTGACCCTGTCAACAACAATGCTTGGTCATTCGCCACCAACTTTGTCCCCGGCAAATAAG
GTGTAGTTGAGATTGTGCTCACCACGAATATGTTGTCATGTGGTTTGAGTTGCACGACCA
TGTTGTAAATTATGAGAATTTTGTGCAAAAGCATTGTTAGATTGTCCAAAAAAAAAAAAA
AA

Homology of Contig U35_189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	4e-168	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	8e-179
Arabidopsis v10	AT2G34420.1	265	4e-156	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265