barSeed - Barley Seed Development Database

Probe CUST_3834_PI390587928

Source Contig U35_14347

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3834_PI390587928	Hv_44K_v2	ATAGGACTGTCCAGCAGTGTTGCTGATAATGTAATGGGTGACATGCCCACGTCTTAATAA	1277	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	3.054	2.905	2.641	3.476	3.076	3.123

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39127.1	1362	2e-24	1281 - 1340	100	60 / 60	plus	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC39292 ABC45487 ABC50221
JLOC1	JLOC1_25496.1	640	8e-25	15 - 74	100	60 / 60	minus
JLOC1	JLOC1_25497.1	1347	8e-25	1273 - 1332	100	60 / 60	plus
Harvest21	ABC02116	684	1e-24	1 - 59	100	59 / 59	minus
Harvest35	U35_14347	1337	3e-25	1278 - 1337	100	60 / 60	plus

Contig Sequence (1337 bp)

>U35_14347 1337 Hv_44K_v2
ACAAGCCACACTAAGCCACCACCAGATAACGAGTAGTGCAGACAGCCTAGTAGTAGCTTT
GGTCTTGCGGCTAGCTTGGTAACCATGGCCGCCTCTGCCTCTTGCATCTCTCTGGTGGTG
CTCGTGGCCCTGTCAACGGCGGCGTCGGCGCAGCTGTCCCCGACGTTCTACAGCGCGTCG
TGCCCCGGGGCGCTGGCCACCATCAAGAGCGCCGTGGCGGCCGCCGTGAGCAAGGACCCT
CGCATGGGCGCCTCGCTGCTCAGGCTGCACTTCCACGACTGCTTTGTCCAAGGCTGCGAC
GCGTCTGTTCTGCTGTCCGGCAACGAGCAGAACGCGGGTCCGAATGCAGGGTCACTGAGG
GGCTTCGACGTCATCGATAGCATCAAGGCGCAGGTCGAGGCCGTGTGCAGGCAGACGGTC
TCCTGCGCCGACATCCTCGCCGTCGCCGCCCGTGACTCCGTCGTCGCCCTCGGAGGCCCG
TCATGGACAGTTCCACTGGGAAGAAGGGACTCGACCACCGCAAACGCAGGTTTGGCAAAC
AGCGATCTCCCTGGCCCTGGCTCCAGCCGGGCACAGCTCGAGGCCGCGTTCCTCAAGAAG
GGCCTGAACACGGTCGACATGGTGGCCCTCTCCGGCGCGCACACCATCGGGCGGGCGCAG
TGCAGTTCCTTCCGCTCCCGGATCTACGGCGGCGACACCAACATCAACGCCGCCTACGCC
GCGTCGCTCCGGGCCAACTGCCCCCAGTCCGGCGGCAACGGCAACCTGGCGTCGCTGGAC
ACGACGACGCCCAACACTTTCGACAACGCCTACTACAAGGACCTGCTGTCCCAGAAGGGC
CTCATGCACTCGGACCAGGTGCTCTTCAACGGCGACACCACCGACAACACCGTCCGCAAC
TTCGCGTCCAACCCGGCCGCGTTCACCAGCGCCTTCACGACGGCCATGATCAAGATGGGC
AACATCGCGCCGCTCACCGGGACGCAGGGCCAGGTCAGGCTCACCTGCTCCAAGGTGAAC
TCCTGATCGACGTACACGTCGACACGACACGCCAATGAATAAGTCCACAGAAGAAGTAGC
CAAGACCAATTATAGCACTTCACAACCCGTCGTGCCGTTCGGGCGTGGTGCTTGAAGACC
TGAAATTTCAAATGCGCTCCTGGATTTCGAAGTGTGACGTTCGGGCATGCAGAGGAGAGA
TGCGAACAGTGCAACCCATGCACTAGCCAATCTACTAGCATGCAGTAATGTAATGGTGCA
CATGCTTTAACGTCGGAATAGGACTGTCCAGCAGTGTTGCTGATAATGTAATGGGTGACA
TGCCCACGTCTTAATAA

Homology of Contig U35_14347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48030.1	315	6e-152	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g17850.1	315	3e-157
Arabidopsis v10	AT5G05340.1	324	3e-116	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324