barSeed - Barley Seed Development Database

Probe CUST_3805_PI390587928

Source Contig U35_14351

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3805_PI390587928	Hv_44K_v2	CAAGCCTACTTACACTTGTACATGGAATGAAGAGGTGCTCTTCTCTCTGTGAAATTTGGC	1236	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.867	0.720	0.597	1.345	1.198
Raw	2.600	3.866	2.378	3.546	2.787	2.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65225.3	945	7e-23	801 - 860	98	59 / 60	plus	ABC02112 ABC02114 ABC02118 ABC02119 ABC02123 ABC45487 ABC50221
JLOC1	JLOC1_42910.3	1511	4e-23	1229 - 1288	98	59 / 60	plus
JLOC1	JLOC1_42910.2	1093	4e-23	811 - 870	98	59 / 60	plus
JLOC1	JLOC1_42910.1	1255	4e-23	973 - 1032	98	59 / 60	plus
Harvest21	ABC02112	1289	6e-22	1222 - 1275	100	54 / 54	plus	ABC02112
Harvest35	U35_14351	1366	3e-25	1237 - 1296	100	60 / 60	plus

Contig Sequence (1366 bp)

>U35_14351 1366 Hv_44K_v2
AAGCAAGCCACAGCCCACAGCCAGATAACAAAGTGCAGGTAGCACGCATAGCCCTGGACT
AGTAGCTAGGTAGCTAGCTAACCATGGCCATGGGTTCTGCCTCTTGCATTTCTCTGGTGT
TGCTCGTGGCTCTGGCCACGGCGGCGTCGGGGCAACTGTCGTCGACGTTCTACGACACGT
CGTGCCCCAGGGCTCTGGCCACCATCAAGAGCGGCGTGGCGGCCGCCGTGAGCAGCGACC
CCCGCATGGGCGCGTCCCTGCTCAGGCTTCACTTCCACGACTGCTTTGTCCAAGGCTGTG
ATGCATCTGTCCTGCTGTCTGGCATGGAACAAAACGCGGGTCCGAACCTGGGGTCGCTGA
GGGGCTTCGGCGTCATCGACAGCATCAAAACCCAGCTGGAGAGTATATGCAAGCAGACCG
TCTCTTGCGCCGACATCCTCACCGTCGCCGCCCGGGACTCCGTCGTCGCCCTTGGAGGGC
CGTCGTGGACTGTCCCGCTGGGGAGACGGGACTCCACCACCGCAAGCGCGGCGCTGGCAA
ACAGCGACCTCCCTGGCCCTGGCTCCAGCCGGTCGCAGCTCGAGGCCGCGTTCCTCAAGA
AGAACCTCAACACGGTCGACATGGTCGCGCTCTCTGGCGCGCACACCATCGGCAAGGCCC
GCTGCTCCACCTTCCGGACTCGGATCTACGGCGGCGACACCAACATCAACGCCGCCTTCG
CGACGTCGCTCAAGGCCAACTGCCCACAGACAACCGGCTCCGGCGACGGCAACCTAGCGA
ACCTCGACACGACCACGCCCAACGGGTTCGACAACGCCTACTACACCAACCTCCTGTCCC
AAAAGGGGCTCCTGCACTCGGACCAGGTGCTCTTCAACAACGACACCACCGACAACACGG
TAAGGAACTTCGCGTCCAGCGCGGCGGCCTTCAGCAGCGCCTTCACGACGGCCATGATCA
AGATGGGAAACATCGCGCCGCTCACCGGGACGCAGGGCCAGATCAGGCTCAGCTGCTCCA
AGGTGAACTCGTGATTGACGCACGAGCTACAATCCGGCAGCTCTCCAGCATCACATGTCA
ATGAATAAGGCCCAAGAACAGTGGTCAATACAAATCAGTATCTACCAGCACTTGAAACGT
GTATTTAAGTACGTGCACCAGCAAAGCATGCGTGCATCTACACATGTAACGGTCGAATTA
TCAATTTCCCATGCAAAGGCAAGGGGAAATTACCATCAAGCCTACTTACACTTGTACATG
GAATGAAGAGGTGCTCTTCTCTCTGTGAAATTTGGCAAAAAAAAAAAAAAAATCATTATT
TTTTCTCAATGTTAAGACAAAACTAGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48030.1	315	6e-149	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g17850.1	315	2e-155
Arabidopsis v10	AT5G05340.1	324	6e-113	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324