barSeed - Barley Seed Development Database

Probe CUST_35832_PI390587928

Source Contig U35_49535

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35832_PI390587928	Hv_44K_v2	GTACTAACTCTAGTACAAAGTTACACTAAGGTTAAGACACTTATTTTAGGACAGAAGGAG	487	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355094	3254	2e-24	3070 - 3129	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00938 ABC00965 ABC00997 ABC01004 ABC02826 ABC09123 ABC35392 ABC36259 ABC40544 ABC41275 ABC45928
JLOC1	JLOC1_48105.1	1209	8e-25	985 - 1044	100	60 / 60	plus
Harvest21	ABC51304	554	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_49535	554	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_49535 554 Hv_44K_v2
TCCTATGCTTGCAAATCAATGATATTGAGCCATTTTGTCAAGACGAAATTGTTCTATACA
AACAATGCGCTGAGAAAAGGGATAAGGAAATAAGGGAACGGCTGCAGGATAGTGAATATA
AATTGGGTTTCTCGATGCCCCTTGAAGATGCAAAGGAAAGAGTCACTCAACTCCAATCAG
AACTCACACTGCTTGAAAGGCGCATGATTCTTGCTACTGGTCTTCAGGGTATGGAAGGAT
TTCGCCAACGATGGAGCTTGCATGGACAGCTCGGCGATACAAGGAAAAGGTTGGAGGCGC
TGAACAGTGGCATGGCAAAAAGAGAGAGCCCAAGTCCTCCAGGCGAAGGCACAACACCTG
CAGTTAAGAAGAGGTGGTTCTTTTAGTATTTTTTTCCGACTTGCAAAACATTGTCACTGA
TGTCGTGTTAATGGCAATGTCATCCACTCATATATTGTCTCCGTCCCAAAATAACTATCT
TAATTTTGTACTAACTCTAGTACAAAGTTACACTAAGGTTAAGACACTTATTTTAGGACA
GAAGGAGTATTTAT

Homology of Contig U35_49535 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33510.1	180	2e-75	protein\|expressed protein
Brachypodium v1_2	Bradi5g09230.1	179	8e-80
Arabidopsis v10	AT4G04190.1	184	2e-52	unknown protein; Has 35 Blast hits to 35 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr4:2024873-2026330 FORWARD LENGTH=184