barSeed - Barley Seed Development Database

Probe CUST_34456_PI390587928

Source Contig U35_46989

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34456_PI390587928	Hv_44K_v2	ATCCGTTGTAAAAAGTGCTTGAGCAAGAACTAATGAATTGCAATCTGTCTTACGTCCAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4488.1	831	7e-23	179 - 235	100	57 / 57	minus	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32857 ABC49622 ABC49876
JLOC1	JLOC1_2795.1	825	4e-23	178 - 234	100	57 / 57	minus
Harvest21	ABC47720	513	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_46989	513	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (513 bp)

>U35_46989 513 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGACGTAAGACAGATTGCAATTCATTAGTTCTTGCTCAAGCAC
TTTTTACAACGGATGATTTGAGCACACTAAATTCTCCAGAAAGGTTTACACTAAAACTTG
TGCAAGGTAAGCAAGCAAAGTATTACATGGACATTATATGAATATAACCAGAGAATCACA
CTACGTGAGACAGACTGCAATTCGTTAGTTAAGCACTTGTAACAACGGACACCAAAATTT
CTCCAATTAAGTACATTACACTACAGGTTACGGTGGATCACTCGATGGCATACTCATTTC
TTGATGGCAGCCTTGGTAACCTCCTTCTTCTCCACACCCTTGATGACACCAACAGCAACC
GTTTGTCTCATGTCACGCACAGCAAAACGGCCAAGAGGAGGGTAGGCGGCGAAGGTCTCC
ACAACCATGGGCTTGGTGGGAATCATCTTCACGATACCGGCATCACCCTTCTTCAGGAAC
TTGGGCAGCGCCTCCAGCTCCTTACCAGATCGC

Homology of Contig U35_46989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None