barSeed - Barley Seed Development Database

Probe CUST_27475_PI390587928

Source Contig U35_42740

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27475_PI390587928	Hv_44K_v2	TATCATCGTCTGCGGTTTCGCCTTCCTTGGCCAAAGTAGCGTAATATTAGTTATGTATAT	502	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251236.1	1549	2e-24	1338 - 1397	100	60 / 60	plus	ABC00268 ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612 ABC37216 ABC38668
MLOC	MLOC_60734.3	1316	2e-24	1016 - 1075	100	60 / 60	minus	ABC00268 ABC00278 ABC00431 ABC12084 ABC37216 ABC38668
MLOC	MLOC_60734.2	1451	2e-24	1151 - 1210	100	60 / 60	minus	ABC00268 ABC00278 ABC00431 ABC12084 ABC37216 ABC38668
MLOC	MLOC_60734.5	970	2e-24	582 - 641	100	60 / 60	minus	ABC00268 ABC00278 ABC00431 ABC12084 ABC37216 ABC38668
JLOC1	JLOC1_39632.1	1652	8e-25	242 - 301	100	60 / 60	plus
Harvest21	ABC38597	562	3e-25	503 - 562	100	60 / 60	plus
Harvest21	ABC00278	1702	3e-25	1327 - 1386	100	60 / 60	plus	ABC00278
Harvest21	ABC00268	523	3e-25	148 - 207	100	60 / 60	minus	ABC00268
Harvest21	ABC38547	461	1e-23	134 - 193	98	59 / 60	minus
Harvest35	U35_42740	562	3e-25	503 - 562	100	60 / 60	plus
Harvest35	U35_14205	1833	3e-25	1367 - 1426	100	60 / 60	plus
Harvest35	U35_14202	523	3e-25	148 - 207	100	60 / 60	minus

Contig Sequence (562 bp)

>U35_42740 562 Hv_44K_v2
GCTGGGGTGTAGCTGTGCTGGTGGGTGTGCCACACAAGGACGCTGAATTCAAGACCCACC
CGATGAACTTCCTGAATGAGAGGACCCTGAAGGGCACCTTCTTCGGTAACTTCAAGCCGC
GCACTGACCTGCCCAATGTCGTGGAGATGTACATGAAGAAGGTAAACAGGAATCGCTAAT
TGCTGCAGCTTGGTCTATATTTGCGACTTCTTGGGAGCCACACACTTCTTCAAAATGTTA
AGCATTGAAAGCTTGGTGCTCATGCTCAAACAACGTGCGATTGTTGTCAGGAGCTGGAGG
TGGAGAAGTTCATCACACACAGCGTGCCGTTCTCGGAGATAAACAAGGCCTTCGACCTTA
TGGCGAAGGGGGAGGGCATCCGTTGCATCATCCGCATGGACAACTAGGCGTCCTCCTCAA
GTGCTTCTGATCGCTCCGATGTAATAAGCGCTGGGGGCCGGCTTCTGAACCAGATCATCG
GTGATGGTAATACACTTCCATGTATCATCGTCTGCGGTTTCGCCTTCCTTGGCCAAAGTA
GCGTAATATTAGTTATGTATAT

Homology of Contig U35_42740 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None