barSeed - Barley Seed Development Database

Probe CUST_15756_PI390587928

Source Contig U35_13786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15756_PI390587928	Hv_44K_v2	TTAGTGTGCTCAAATCATCCGTTGTAAAAAGTGCTTGAGCAAGAACTAATGAATTGCAAA	765	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4488.1	831	6e-24	193 - 251	100	59 / 59	minus	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32857 ABC49622 ABC49876
JLOC1	JLOC1_2795.1	825	3e-24	192 - 250	100	59 / 59	minus
Harvest21	ABC00679	744	3e-25	15 - 74	100	60 / 60	minus	ABC00679
Harvest21	ABC47720	513	1e-24	32 - 90	100	59 / 59	minus
Harvest35	U35_13786	839	3e-25	766 - 825	100	60 / 60	plus
Harvest35	U35_46989	513	1e-24	32 - 90	100	59 / 59	minus

Contig Sequence (839 bp)

>U35_13786 839 Hv_44K_v2
TGAGACTGGTGTCATCAAGCCTGGTATGGTTGTTGCCTTTGGCCCCACTGGTCTGACAAC
TGAGGTCAAGTCTGTTGAGATGCACCATGAGCCTCTCCTGGAGGCGCTTCCTGGTGACAT
TGTCGGCTTCAATGTCGAGAATGTAGCCGTAAAGGATTTGAAGCGTGGGTTTGTTGCATC
CAACTCCAAGGATGACCCTGCCAAGGAGGCAGCCAACTTCACTTCCCAGGTCATCATCAT
GAACCACCCTGGTCACATTAGCAATGGCTATGCCCCAGTGCTGGACTGCCACACCTCCCA
CATTGCTGTCAAGTTTGCTGAGCTGGTGACCAAGATCGACAGGCGATCTGGTAAGGAGCT
GGAGGCGCTGCCCAAGTTCCTGAAGAAGGGTGATGCCGGTATCGTGAAGATGATTCCCAC
CAAGCCCATGGTTGTGGAGACCTTCGCCGCCTACCCTCCTCTTGGCCGTTTTGCTGTGCG
TGACATGAGACAAACGGTTGCTGTTGGTGTCATCAAGGGTGTGGAGAAGAAGGAGGTTAC
CAAGGCTGCCATCAAGAAATGAGTATGCCATCGAGTGATCCACCGTAACCTGTAGTGTAA
TGTACTTAATTGGAGAAATTTTGGTGTCCGTTGTTACAAGTGCTTAACTAACGAATTGCA
GTCTGTCTCACGTAGTGTGATTCTCTGGTTATATTCATATAATGTCCATGTAATACTTTG
CTTGCTTACCTTGCACAAGTTTTAGTGTAAACCTTTCTGGAGAATTTAGTGTGCTCAAAT
CATCCGTTGTAAAAAGTGCTTGAGCAAGAACTAATGAATTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08050.1	448	2e-99	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi4g12750.2	448	2e-102
Arabidopsis v10	AT5G60390.1	449	1e-97	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449