barSeed - Barley Seed Development Database

Probe CUST_14005_PI390587928

Source Contig U35_13708

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14005_PI390587928	Hv_44K_v2	AGCTTTGGTGAAACCTGGATGTTATGAGACTTGATTGTGTCTTTTGATAGCTTGTTGAAT	1805	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31903.2	1510	2e-24	1199 - 1258	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
JLOC1	JLOC1_20897.1	1510	8e-25	1200 - 1259	100	60 / 60	plus
Harvest21	ABC49622	682	3e-25	150 - 209	100	60 / 60	minus	ABC49622
Harvest21	ABC00313	759	3e-25	22 - 81	100	60 / 60	minus
Harvest21	ABC00887	1721	1e-24	1605 - 1663	100	59 / 59	plus	ABC00887
Harvest35	U35_47983	682	3e-25	150 - 209	100	60 / 60	minus
Harvest35	U35_13708	1908	3e-25	1806 - 1865	100	60 / 60	plus

Contig Sequence (1908 bp)

>U35_13708 1908 Hv_44K_v2
AGGCCAGTTCGCCGCTTCCTCCTCTACTCGGCGGCCCCCTCCGCAACCTCGAGCCGATCC
ACGGCGATCATGTTCGCCGAAAAGGGTGTTGACATGACACCTCAGCCCCGGAAAGTTAAG
ATTAAAATCAGTGTCCCTTACGACACAAGTCGGAAGATTCACAACCGACACCATAGAAGT
TTGAGTACAGGTCAAGGCCAGGACCCTCCGAACAAGGAGGAGGAGGATCAGGACGAGCAT
GTCGTATATGGCTATGAGGATAGTTTGGTCAAACTCGATCCACCCATCAGTAAGCAGAAA
GCTCGTATGAACATCGTGGTCATTGGCCATGTCAACTCTGGCAAGTCGACCACCACTGGC
CATCTGATCTACAAGCTTGGAGGTATCGATGAGACTGTGATCCAGTGCCTTGAGAAGGAA
GCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTGCTTGACAAGCTGAAGGCT
GAGAGGGAGAGGGGTATCACCATTGATATTGCCCTGTGGAAATTCGAGACCACCAAATAC
TACTGCACTGTCATTGATGCCCCTGGTCACCGTGACTTCATCAAGAACATGATTACTGGT
ACCTCCCAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCAAAGGTGGCTTTGAGGCT
GGCATCTCCAAGGATGGCCAGACCCGTGAGCATTCGCTGCTTGCCTTTGTTTTAGGAGTT
AAGCAGATGATCTGCTGCTGCAACAAGATGGACGCCACAGCTCCCAAGTACTCGAAGACC
CGTTACGAGGAAATTGTTAAGGAAGTCTCTTCCTACCTGAAGAAGGTCGGCTACAACCCT
GACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTGAGGGTGACAACATGATTGAGAGGTCC
ACCAACCTCAACTGGTACAAGGGCCCTACCCTGGTTGAGGCACTTGACCAGATCAACGAG
CCCAAGAGGCCCTCAGACAAGCCCCTGCGTCTTCCCCTCCAGGACGTTTACAAGATTGGT
GGCATTGGAACCGTGCCTGTTGGCCGTGTTGAGACTGGTGTCATCAAGCCTGGTATGGTT
GTGACCTTTGGTCCCACTGGTCTGACAACTGAGGTCAAGTCCGTTGAGATGCACCATGAG
TCTCTCCTGGAGGCGCTTCCCGGTGACAACGTCGGCTTCAACGTCAAGAACGTTGCTGTG
AAGGATCTGAAGCGTGGGTTTGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAGGCA
GCCAACTTCACCGCCCAGGTCATCATCATGAACCACCCTGGTCAGATTGGCAATGGCTAC
GCTCCAGTGCTGGACTGCCACACCTCACACATTGCTGTCAAGTTTGCTGAGCTGGTGACC
AAGATCGACAGGCGATCAGGTAAGGAGCTGGAGGCCCTGCCCAAGTTCCTCAAGAATGGT
GATGCTGGTATAGTGAAGATGATTCCCACCAAGCCCATGGTTGTGGAGACCTTTGCCACT
TACCCTCCTCTTGGTCGTTTTGCTGTCCGTGACATGAGGCAAACTGTGGCTGTTGGTGTC
ATCAAGGGCGTGGAGAAGAAGGACCCCACCGGCGCCAAGGTGACCAAGGCTGCCATCAAG
AAGAAGTAATTTGACAATTGATACCCAAATTACTGTTTCAGACACCAAGCAATTTTTAGC
GTTGGCTAGAGTTTTGTCAAGGGCATTGTTCGTACTGGGTATATTTTAGCTGTTCGGCTG
TTAGCGCTGCATATTGTGCCCTTGGTGGTGTCTGTCTTGTGCCTTTTACATACTGTTCTA
ATGTAAGCTTTGGTGAAACCTGGATGTTATGAGACTTGATTGTGTCTTTTGATAGCTTGT
TGAATTTTATACGTGTAGATGCAATTTTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08050.1	448	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi4g12750.2	448
Arabidopsis v10	AT5G60390.1	449	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449