barSeed - Barley Seed Development Database

Probe CUST_13391_PI390587928

Source Contig U35_385

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13391_PI390587928	Hv_44K_v2	GTGTCACATGAGTTGTAACACCAACATGTATATTATGAGAATTATGTGCGAAGAAATTGC	899	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44067.1	1132	6e-24	966 - 1024	100	59 / 59	plus	ABC00006 ABC00194 ABC00422 ABC00425 ABC00433 ABC00828 ABC00926 ABC00949 ABC00981 ABC01012 ABC26767 ABC53022
JLOC1	JLOC1_28526.1	1075	3e-24	959 - 1017	100	59 / 59	plus
Harvest21	ABC00425	975	5e-23	888 - 946	98	58 / 59	plus	ABC00425
Harvest35	U35_385	977	3e-25	900 - 959	100	60 / 60	plus

Contig Sequence (977 bp)

>U35_385 977 Hv_44K_v2
GGATCTCCACGCACTCTAAGCCATATTCTTGGAGAACACACAGCACACCATCAGTCTCTA
CAGGGCAATGGTGGCCACCACCATGTCTCTTTCCTCTTCGTCCTTCGCCGGCAAGGCCGT
GAAGAACTTGCCCTCGCCGGCTCACATTGGCGAGGCACGTGTGACCATGCGCAAGACCGC
CGTGAAGGCCAAGCAGGTTTCGTCGGGCAGCCCATGGTATGGCTCTGACCGTGTGCTCTA
CCTCGGCCCCCTTTCCGGGGAGCCGCCTAGCTACTTGACTGGTGAGTTTCCCGGTGACTA
CGGATGGGACACCGCCGGGCTCTCGGCTGATCCTGAGACCTTCGCCAAGAACCGGGAGCT
CGAGGTGATTCATTGTCGATGGGCCATGCTCGGTGCCCTTGGTTGTGTTTTTCCCGAGTT
GCTTGCCCGCAATGGCGTGAAGTTTGGCGAGGCCGTCTGGTTCAAGGCTGGCTCTCAGAT
CTTCAGCGAGGGTGGCCTCGACTACCTTGGCAACCCCAACCTCGTTCATGCTCAGAGCAT
CCTCGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTTGAGGGGTACCGCATTGC
TGGTGGTCCGCTCGGCGAGATCGTCGACCCACTCTATCCTGGTGGCAGCTTTGACCCGCT
TGGCCTGGCCGACGACCCCGAGGCATTTGCGGAGCTCAAGGTTAAGGAGATCAAGAATGG
ACGCCTTGCCATGTTCTCCATGTTTGGCTTTTTTGTGCAGGCCATTGTCACTGGCAAGGG
CCCACTGGAGAACCTTGCAGACCACATTGTCGACCCTGTCAACAACAATGCGTGGGCATT
CGCCACCAACTTTGTGCCCGGGAAGTAAGACATGAGTGATGAATGCGAGTTGTATGTGAG
TGTCACATGAGTTGTAACACCAACATGTATATTATGAGAATTATGTGCGAAGAAATTGCA
AAAAAAAAAAAAAAAAA

Homology of Contig U35_385 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	6e-172	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g12130.1	267	0.0
Arabidopsis v10	AT2G34420.1	265	7e-164	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265