barSeed - Barley Seed Development Database

Probe ABC49625

Source Contig ABC49625

barSeed

Links

Affymetrix Source Sequence (389 bp)

>ABC49625 389
TGACAGTTGAGAAGATGATAGAGTACGGGCACATGCTCGTTCAGGAGCAGGACAATGTCA
AGCGTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGCTGTGGGTGATGCTAACCAGG
ATGCGATGAAGACTGGTTCCTTCTACGGTTAGAAAATTCTCCATACACACCCACCATCTC
TTGCTGCATAGGAGTAGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGAGTT
GCACCGACCAAAATGTCCAAGATTAACGACCCAACGGCAAGGAGCGACGACGGCAGCTGC
CTTTACACCTTTTAAGCATGCCACTTTTAACATTTGATGTTTTACCAACCTAAGTCCGCA
TCGCAACCAAGCGATTGCTGGGCATGTTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248820.1	1636	0.0	1194 - 1580	96	374 / 389	CUST_9545_PI390587928 CUST_27994_PI390587928 CUST_25850_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
MLOC_46999.2	706	0.0	126 - 512	96	374 / 389	CUST_25850_PI390587928 CUST_9545_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC49625
AK252550.1	1672	3e-179	1226 - 1612	96	373 / 389	CUST_25850_PI390587928 CUST_9545_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK249593.1	1814	2e-82	1590 - 1781	95	185 / 194	CUST_27994_PI390587928 CUST_9545_PI390587928 CUST_9552_PI390587928 CUST_25850_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
MLOC_46999.3	878	2e-82	125 - 316	95	185 / 194	CUST_25850_PI390587928 CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC49625
AK249203.1	1752	2e-82	1508 - 1699	95	185 / 194	CUST_25850_PI390587928 CUST_9552_PI390587928 CUST_27994_PI390587928 CUST_9545_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
MLOC_46999.1	656	1e-64	314 - 462	97	144 / 149	CUST_25850_PI390587928 CUST_9545_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC49625