barSeed - Barley Seed Development Database

Probe ABC01017

Source Contig ABC01017

barSeed

Links

Affymetrix Source Sequence (1129 bp)

>ABC01017 1129
GTCAACAACCANTGGTGAACGCCACCCTGCTGAACATCGCCGTATGCCCCCACCAACGTG
CAGCTCCCTGGCATGTACAACAAGGAGGAGAACCCCCGTGTGCCCATCGTCGTCACCGGT
AACGATTTCTCGACGCTCTACGCTCCTCTGATCCGTGATGGTCGTATGGAGAAGTTCTAC
TGGGCTCCCACCCGTGACGACCGTATCGGTGTCTGCAAGGGTATCTTCCAGACCGACAAT
GTCAGTGACGAGTCTGTCGTCAAGATCGTCGACACCTTCCCAGGACAATCCATTGACTTT
TTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGAGGTGCGCAAGTGGGTCGGCTCTACC
GGAATCGAGAACATTGGCAAGAGGCTGGTGAACTCGCGGGACGGGCCCGTGACCTTCGAG
CAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTACGGGCACATGCTCGTCCAGGAGCAG
GACAATGTCAAGCGTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGCTCTGGGTGAT
GCTAACCAGGATGCGATGAAGACTGGTTCCTTCTACGGTTAGAAAATTCTCCATACACAC
CCACCATCTCTTGCTGCATAGGAGGATGAACTACGCACAATCTTCTTATACTTTCAGCAA
CTACTTTACATGCATACTTCTTTCTCACTTTCTTACTTCGGAAAAAAAAAGGGAGTGGAG
GCCTGTTTTTCTTACCTGCTCTTCCGCCGGCATATCAAGCTCATCTTCTCATCACGTCGT
CCAAAACAATTAAATTGCAGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGG
TTGCACCGACCAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTG
CCTTTACACCTTTTAAGCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGC
ATCGCATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGAGTAT
ACCCATTTGGCAAAGACCAATACACCTACTTATCATTTGTCAAAAAAAAAAAAAAAAACT
TCAGTGGAGACTCCTTCTGCTTTGTTGCAAACAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249593.1	1814	0.0	790 - 1814	99	1020 / 1026	CUST_27994_PI390587928 CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
MLOC_46999.3	878	0.0	2 - 822	98	806 / 821	CUST_9552_PI390587928 CUST_27994_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928	ABC01013 ABC01017 ABC49625
AK249203.1	1752	2e-165	1419 - 1734	100	316 / 316	CUST_27994_PI390587928 CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK248820.1	1636	1e-127	1389 - 1636	100	248 / 248	CUST_25850_PI390587928 CUST_9545_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK252550.1	1672	7e-121	1421 - 1656	100	236 / 236	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
MLOC_46999.2	706	4e-143	3 - 317	96	302 / 315	CUST_27994_PI390587928 CUST_25850_PI390587928 CUST_9545_PI390587928	ABC01013 ABC01017 ABC49625
MLOC_46999.1	656	1e-142	3 - 316	96	301 / 314	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC49625
MLOC_70815.1	546	1e-147	39 - 333	99	292 / 296	None	ABC01013 ABC01017 ABC01019