- Probe CUST_9545_PI390587928
- Source Contig U35_13899
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9545_PI390587928 | Hv_44K_v2 | CATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGTGTATACCC | 1443 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.464 | 5.005 | 1.196 | 0.794 | 0.205 | 0.339 |
| Raw | 617.430 | 793.057 | 157.382 | 172.185 | 13.971 | 27.319 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK249203.1 | 1752 | 7e-23 | 1674 - 1733 | 98 | 59 / 60 | plus | ABC01013 ABC01017 ABC01019 ABC49625 |
| MLOC | AK252550.1 | 1672 | 7e-23 | 1587 - 1646 | 98 | 59 / 60 | plus | ABC01013 ABC01017 ABC01019 ABC49625 |
| MLOC | AK248820.1 | 1636 | 7e-23 | 1555 - 1614 | 98 | 59 / 60 | plus | ABC01013 ABC01017 ABC01019 ABC49625 |
| MLOC | MLOC_46999.3 | 878 | 7e-23 | 91 - 150 | 98 | 59 / 60 | minus | ABC01013 ABC01017 ABC49625 |
| MLOC | MLOC_46999.1 | 656 | 7e-23 | 92 - 151 | 98 | 59 / 60 | minus | ABC01013 ABC01017 ABC49625 |
| MLOC | MLOC_46999.2 | 706 | 7e-23 | 92 - 151 | 98 | 59 / 60 | minus | ABC01013 ABC01017 ABC49625 |
| MLOC | AK249593.1 | 1814 | 3e-22 | 1756 - 1814 | 98 | 58 / 59 | plus | ABC01013 ABC01017 ABC01019 ABC49625 |
| JLOC1 | JLOC1_30357.2 | 797 | 4e-23 | 507 - 566 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_30357.1 | 844 | 4e-23 | 554 - 613 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC49790 | 709 | 1e-23 | 25 - 84 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC01021 | 181 | 1e-23 | 76 - 135 | 98 | 59 / 60 | plus | ABC01021 |
| Harvest21 | ABC01020 | 462 | 1e-23 | 321 - 380 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01017 | 1129 | 1e-23 | 965 - 1024 | 98 | 59 / 60 | plus | ABC01017 |
| Harvest21 | ABC01016 | 1083 | 1e-23 | 907 - 966 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01015 | 1878 | 1e-23 | 1673 - 1732 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01014 | 1162 | 1e-23 | 149 - 208 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC01013 | 1661 | 1e-23 | 1552 - 1611 | 98 | 59 / 60 | plus | ABC01013 |
| Harvest35 | U35_13899 | 1508 | 3e-25 | 1444 - 1503 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33209 | 734 | 1e-23 | 87 - 146 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_13903 | 181 | 1e-23 | 76 - 135 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13900 | 1819 | 1e-23 | 1619 - 1678 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13897 | 1162 | 1e-23 | 955 - 1014 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13895 | 897 | 1e-23 | 732 - 791 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_13893 | 1367 | 1e-23 | 1280 - 1339 | 98 | 59 / 60 | plus |
Contig Sequence (1508 bp)
>U35_13899 1508 Hv_44K_v2 ATGGCTGCTGCCTTCTCCTCCACCGTCGGGGCTCCGGCTTCTACGCCGACCAACTTCCTC GGGAAGAAGCTCAAGAAGCAGGTGACCTCGGCCGTGAACTACCATGGCAAGAGCTCCAAG GCCAACAGGTTCACAGTCATGGCAGCGGAGAACATCGACGAGAAGAGGAACACCGACAAG TGGAAGGGTCTTGCGAACGATATCTCCGACGACCAGCAGGACATCACCAGAGGGAAGGGC ATCGTGGACTCGCTCTTCCAGGCGCCCACGGGCCACGGCACCCACGAGGCCGTCCTCAGC TCCTACGAGTACGTCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGGAGGC TTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTCCATCTCTCCAAAAACTTCATG ACCCTGCCCAACATCAAGATCCCACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGA AAATCATTCCAGTGTGAGCTTGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGT GCCGGAGAGCTGGAGAGTGGGAACGCTGGAGAGCCAGCCAAGCTCATCAGGCAGCGGTAC CGTGAGGCTGCAGACATGATCAAGAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTT GACGCTGGTGCGGGTAGGATGGGCGGAACCACGCAGTACACCGTCAACAACCAGATGGTG AACGCCACCCTGATGAACATCGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTAC AACAAGAGGGAGAACCCCCGTGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTC TACGCTCCTCTGATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGAC GACCGTATCGGTGTCTGCAAGGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTC GTAAAGATCGTCGACACCTTCCCAGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCT CGGGTGTACGACGATGAGGTGCGCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGC AAGAGGCTGGTGAACTCGCGGGACGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTC GAGAAGCTGCTAGAGTACGGGCACATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTG CAGCTTGCTGACACCTACATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATG AAGACTGGTTCCTTCTACGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGT TGCACCGACCAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGC CTTTACACCTTTTAAGCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCA TCGCATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGTGTATA CCCATTTG
Homology of Contig U35_13899 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g47970.1 | 467 | 0.0 | protein|AAA-type ATPase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g09125.2 | 466 | 0.0 | |
| Arabidopsis v10 | AT2G39730.1 | 474 | 0.0 | | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474 |