barSeed - Barley Seed Development Database

Probe ABC01019

Source Contig ABC01019

barSeed

Links

Affymetrix Source Sequence (1939 bp)

>ABC01019 1939
ACGAGGATCTGTACCTGCTAACCACTGCACCCCTCTCTTTTATCCATATCAGCTCCATCC
ATCACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTGTACTAGTAGTACGCCGGCC
TAATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCACTGCACGTACGCACATCAA
ATTAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGAAGAGAACGATCGATCAACA
CCATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGCGTCGACCCCGACCATCTTCC
TGGGCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAGGGTGGTGA
GGGTCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATGCGGACCGGTGGA
AGGGTCTGGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGGGGGAAAGGCATCG
TGGACTCCCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCCATCCTAAGCTCCT
ACGAGTACATCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGACGGGCTGT
ACATCGCGCCGGCATTCATGGACAAGCTCATCGTCCACCTCGCCAAGAACTTCATGACAC
TCCCCAACATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGGCAAGGGACAGGGCAAGT
CGTTCCAGTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGCGCCG
GTGAGCTGGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGATCCGGCAGAGGTACCGCG
AGGCGGCCGACATTATCAACAAGGGCAAGATGTGCTGCCTCTTCATCAACGACCTGGACG
CCGGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAACCAGATGGTGAACG
CCACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCTCCCGGGGATGTACAACA
AGGAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGACTTCTCGACGCTGTACG
CTCCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGCGCCCACCCGCGAGGACC
GCATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGACGAGGCCGTGGTGA
GGCTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCGCTGCGGGCACGGG
TGTACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAGAACATCTCCAAGC
GCCTCGTCAACTCGAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAGATGACCATAGAGA
AGCTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTCAAGCGTGTGCAGC
TCGCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGACGACGCCATGAAGA
CCGGTGCCTTCTACGGCAAGTAGAAGGTCCTACTCTACTTAAGATGCATGCATGCACTAT
ATATATGTTGGACTATTTTGGACCCGAAATCCACTCAAACTTTTTGATTCATCGCCGCAC
AGGTAACCCAATTGTAAGTCTCTTCTTGAAAGAGAAAGGAATTGTATATGTTCTTAAATC
GTCATTTTCCGCTTAAATCATTTCTCCAATGGATGCAAGCTAGGGTCCCAAGTCCCAACA
ACCTATATATCTCTTGATATTAGCACTTGTCGGAAGATTAGCACATATGTGGAAATCATC
TGAAGCTTGTTGATTAGGTACGAGTACTGTGGATGTGGGGGGTCATGACTCATCACATAC
ATACATATTTTCCCTTTGACGGATTACGGAAACCCCAATTTGCACCACAAAGTTATTAAC
AAGGACAACATCACTAGAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_70817.2	1974	0.0	1 - 1838	99	1837 / 1839	None	ABC01013 ABC01019
MLOC_70817.1	4158	3e-141	3798 - 4070	100	273 / 273	CUST_226_PI390587928	ABC01013 ABC01019
AK249203.1	1752	0.0	271 - 1371	85	936 / 1101	CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK249593.1	1814	0.0	267 - 1367	85	936 / 1101	CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK252550.1	1672	0.0	273 - 1373	85	935 / 1101	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK248820.1	1636	0.0	350 - 1341	85	839 / 992	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
MLOC_70815.1	546	1e-144	41 - 511	86	407 / 471	None	ABC01013 ABC01017 ABC01019
AK248708.1	2098	4e-110	266 - 605	88	299 / 340	None	ABC01013 ABC01019 ABC01747 ABC01748
MLOC_70816.1	1066	9e-102	1 - 325	87	284 / 325	None	ABC01013 ABC01019
MLOC_70816.2	997	3e-101	4 - 324	88	281 / 321	None	ABC01013 ABC01019