barSeed - Barley Seed Development Database

Probe ABC01013

Source Contig ABC01013

barSeed

Links

Affymetrix Source Sequence (1661 bp)

>ABC01013 1661
ACATAGCTCGGCCTCTATACTTTGAGCAGCAGCAGTCATTCATCACTGATCACCAGCACA
GCCGCGCGCATCCACCGTTGCTAGCAAGGTCGACCAAGCAGCACAGAGATGGCTGCTGCC
TTCTCCTCCACCGTCGGGGCTCCGGCTTCTACGCCGACCAACTTCCTCGGGAAGAAGCTC
AAGAAGCAGGTGACCTCGGCCGTGAACTACCATGGCAAGAGCTCCAAGGCCAACAGGTTC
ACAGTCATGGCAGCGGAGAACATCGACGAGAAGAGGAACACCGACAAGTGGAAGGGTCTT
GCGTACGATATCTCCGACGACCAGCAGGACATCACCAGAGGGAAGGGCATCGTGGACTCG
CTCTTCCAGGCGCCCACGGGCGACGGCACCCACGAGGCCGTCCTCAGCTCCTACGAGTAC
GTCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGGAGGCTTCTACATCGCT
CCTGCTTTCATGGACAAGCTTGTTGTCCATCTCTCCAAAAACTTCATGACCCTGCCCAAC
ATCAAGATCCCACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAG
TGTGAGCTTGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGTGCCGGAGAGCTG
GAGAGTGGGAACGCTGGAGAGCCAGCCAAGCTCATCAGGCAGCGGTACCGTGAGGCTGCA
GACATGATCAAGAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTTGACGCTGGTGCG
GGTAGGATGGGCGGAACCACGCAGTACACCGTCAACAACCAGATGGTGAACGCCACCCTG
ATGAACATCGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTACAACAAGAGGGAG
AACCCCCGTGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCTCTG
ATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATCGGT
GTCTGCAAGGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTCGTAAAGATCGTC
GACACCTTCCCAGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGAC
GATGAGGTGCGCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTG
AACTCGCGGGACGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTA
GAGTACGGGCACATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGAC
ACCTACATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCC
TTCTACGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGACCAA
AATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACCTTT
TAAGCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCAAGC
GATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGAGTATACCCATTTGGCAA
AGACCANANAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249203.1	1752	4e-115	1509 - 1734	100	226 / 226	CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK252550.1	1672	4e-120	1422 - 1669	98	248 / 253	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK249593.1	1814	5e-114	1591 - 1814	100	224 / 224	CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
AK248820.1	1636	6e-123	1390 - 1629	100	240 / 240	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC01019 ABC49625
MLOC_70816.2	997	0.0	1 - 611	100	611 / 611	None	ABC01013 ABC01019
AK248708.1	2098	0.0	2 - 605	100	604 / 604	None	ABC01013 ABC01019 ABC01747 ABC01748
MLOC_70817.1	4158	0.0	340 - 1440	85	933 / 1101	CUST_226_PI390587928	ABC01013 ABC01019
MLOC_70817.2	1974	0.0	329 - 1429	85	933 / 1101	None	ABC01013 ABC01019
MLOC_70816.1	1066	0.0	1 - 587	99	586 / 588	None	ABC01013 ABC01019
MLOC_46999.1	656	0.0	77 - 598	100	522 / 522	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC49625
MLOC_70815.1	546	0.0	39 - 511	99	470 / 473	None	ABC01013 ABC01017 ABC01019
MLOC_46999.3	878	6e-123	76 - 315	100	240 / 240	CUST_9552_PI390587928 CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC49625
MLOC_46999.2	706	6e-123	77 - 316	100	240 / 240	CUST_9545_PI390587928 CUST_25850_PI390587928 CUST_27994_PI390587928	ABC01013 ABC01017 ABC49625