barSeed - Barley Seed Development Database

Probe ABC26250

Source Contig ABC26250

barSeed

Links

Affymetrix Source Sequence (787 bp)

>ABC26250 787
GCTGAGACTAGTAGCTCCCCTCCCCATAGCCTAATTTAGCCCGAGCCGTCTCCTGTGCGC
CTCTTTGTCAGTAGCGGCGTCGTCGGCCTGCGGCTAAATTCCGGCAGTCCCGAGCCCCTC
TCCTCCCCCCAGGAACTCTGCTAGCCTGCCCATACCCCTAGGAAGTCGTTCCCATCGTCG
AGCTTAGCCAGGAGCCATTGGAGACCGGAGCCGCAAGTTGACAGAAACTCCCTCCGCCAT
TGTTGAAGTACTGCTCGGCCTCAAGCTCCGCAGCTGCCCCAACCGGAAAAAAATGGATGT
GGCGCTTCCCCCTGAGCATGTGCATAGCCGTAGCGTGGCGGGAGATGCTCTGTGCCGCCG
GCAACCGTCGCCGGAGTGCGACTCTGTACCTGCCCCTACACGCGCGGGAGGTAGAAGGAG
AACCCGACAAGCAGGTCCCGTCTGTCAGAATTTGAAGAGTGGATACCTACTCCAAGATGA
TGGGGGTACCTATCACCCTCTTCAAAACCCTAAGATTGCGTTTGGAGAGGAGCACGATGC
CGTCAACCCCGAAACCTAGGAGTCAAGGATAGCAACCTTGTGAGATAGGAATTTATCCAG
GTCAGCTATTCCTGTGGGAATGGAGTCCCATAGGCACTAGAGATTTCTCAAGTCTCTTCT
GCCGTCATCCTCGGACTTTTGTTCAACCCAGTAGACCTTCATGGTCTTGTAACCCAGATT
TTATATTTTTTCTTGAATATTCTGTATCAAGTAAGTTTCTATCAGCTAACAAAAAAAAAA
AAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360326	787	0.0	11 - 781	99	769 / 771	None	ABC13024 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
MLOC_82067.1	731	0.0	1 - 434	100	434 / 434	None	ABC26250
AK369657	745	3e-163	30 - 739	81	582 / 715	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC26250
AK375431	806	2e-109	488 - 806	89	286 / 321	None	ABC20255 ABC20943 ABC24039 ABC26250
AK374319	1069	5e-106	490 - 808	89	285 / 322	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
AK370907	809	6e-105	489 - 808	88	284 / 322	CUST_3683_PI390587928	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
MLOC_50288.1	415	2e-94	1 - 348	85	297 / 350	None	ABC26250
AK361220	2596	1e-82	111 - 442	84	279 / 334	None	ABC13024 ABC17054 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
AK371480	792	6e-90	539 - 790	91	229 / 253	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
AK373565	1183	3e-88	542 - 799	90	232 / 259	None	ABC13024 ABC16591 ABC17862 ABC20255 ABC20943 ABC24268 ABC26250 ABC31291
MLOC_26651.1	424	6e-85	5 - 418	81	340 / 420	None	ABC26250
AK357030	4472	3e-83	1954 - 2211	88	229 / 259	None	ABC16591 ABC17862 ABC20943 ABC24039 ABC26250 ABC31291
MLOC_76013.1	864	1e-82	416 - 747	84	279 / 334	None	ABC26250
AK363418	2741	4e-82	2236 - 2494	88	228 / 259	None	ABC13024 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
AK249179.1	2702	8e-79	2384 - 2642	87	228 / 261	CUST_13559_PI390587928	ABC13024 ABC17862 ABC26250
AK353839	832	2e-74	553 - 815	86	228 / 265	None	ABC13024 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
AK356131	2909	3e-73	2484 - 2741	86	224 / 260	CUST_34142_PI390587928 CUST_2177_PI390587928	ABC13024 ABC17862 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
AK356447	915	3e-73	541 - 860	82	266 / 323	None	ABC16591 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250 ABC31291
MLOC_24665.1	204	9e-54	1 - 184	88	162 / 185	None	ABC20255 ABC26250
MLOC_40955.1	496	3e-53	233 - 481	82	207 / 252	None	ABC16591 ABC26250 ABC31291