barSeed - Barley Seed Development Database

Probe ABC20943

Source Contig ABC20943

barSeed

Links

Affymetrix Source Sequence (783 bp)

>ABC20943 783
TCCCCCGGGTCTGCAGGAATTGGCACGAGGCTGGCCTTAGCTCTCCCCCCTCGCCCAACT
TGACCGAAGCTGCAGAAATTTTCTGTGTGTAGCGCCACGGTTGCCTCCGGTGAAATTCAC
CATGGCCGAAGCCCCCTAGCTGCACCCCACCGCACCAGCCGCACCCCTTGAGACCCCTCG
AATCATCGCCGCCGCTGGAGCTCGTAGAAGAGCCGATGTGGATCGAAGTTTCTGAACCAG
TAGAGCCTCCCGCCCTTGTTGAGGCCCCGCTCAGCCCCGAGCTCCGTAGCGCCTCCAACC
ACCAAAAATGGATGCCTCTCATTCCCACGAACACGTACATGGTCGGAGCGCGATGGGAGG
TGCACTGTGCCGCCGGTGAGCCTCGCCGGAAAATTGCCTCTGTTCTGCCACACACGCGTG
GGAGGTGGGAGAAGGACCCGACAGGAGGGCCCCGCCTGTCGGTGGGAGAGCCAAGCCTCG
AGGAGAGCAAACCCACTGATTGCGTTTGGAGAGGAGCACGATGTCGTCAACCCCGGAACC
TAGGAGTCAAGGATAGCAGCCTCGTGAGATAGGAATTTATCCAGGTCAGTTGTTCCTGTG
GGAATGGAGTCCCATGGGCACTAGAGAGTCCTCGAGTCGCTTCCGTTGTCAACCTTAGAC
TTTTATTCAACCCAGTATACCTTCATGGTCTTGTAACCCAGATTTTGTATTTTGCTTGGA
TATTCTGTATCAAGTAAGTGTCTACCATCTAACAGCAATCCTGGGGCTGCTAAACACAGA
GAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK371480	792	3e-128	544 - 792	100	249 / 249	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
AK357030	4472	6e-125	17 - 481	84	398 / 472	None	ABC16591 ABC17862 ABC20943 ABC24039 ABC26250 ABC31291
AK361220	2596	8e-114	2285 - 2570	93	265 / 286	None	ABC13024 ABC17054 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
AK373565	1183	4e-112	542 - 827	92	264 / 286	None	ABC13024 ABC16591 ABC17862 ABC20255 ABC20943 ABC24268 ABC26250 ABC31291
AK363418	2741	4e-107	2237 - 2523	91	262 / 287	None	ABC13024 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
AK374319	1069	4e-102	552 - 837	90	258 / 286	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
AK375431	806	4e-97	554 - 803	92	231 / 250	None	ABC20255 ABC20943 ABC24039 ABC26250
AK360326	787	1e-92	512 - 787	89	247 / 277	None	ABC13024 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
AK353600	354	1e-92	47 - 343	88	261 / 298	None	ABC13024 ABC16591 ABC17862 ABC20255 ABC20943 ABC24039 ABC31291
AK370907	809	4e-92	539 - 807	90	241 / 269	CUST_3683_PI390587928	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
AK356447	915	8e-89	607 - 886	88	247 / 281	None	ABC16591 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250 ABC31291
MLOC_3669.1	633	8e-89	1 - 296	87	263 / 303	None	ABC20943
AK353839	832	2e-85	559 - 826	88	237 / 269	None	ABC13024 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
AK356131	2909	2e-85	2485 - 2764	87	246 / 282	CUST_34142_PI390587928 CUST_2177_PI390587928	ABC13024 ABC17862 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
AK358749	844	8e-79	512 - 806	85	252 / 297	None	ABC13024 ABC20255 ABC20943
AK248553.1	2796	1e-72	2457 - 2715	86	224 / 261	None	ABC16591 ABC17862 ABC20943 ABC24039 ABC31291
AK369657	745	4e-72	513 - 745	88	207 / 235	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC26250
MLOC_773.1	397	2e-70	38 - 389	81	289 / 358	None	ABC20943
MLOC_4646.1	879	8e-64	628 - 878	85	215 / 254	CUST_29836_PI390587928	ABC13024 ABC17862 ABC18880 ABC20943