barSeed - Barley Seed Development Database

Probe ABC24039

Source Contig ABC24039

barSeed

Links

Affymetrix Source Sequence (611 bp)

>ABC24039 611
GCTTTCCTTTCTTGTTTAACAACATTGGTGGACATGATTTATATGCATGAATGTACCCGT
GAATTAATGGCATGATAGAGTTATTAAGTGAATTATACATGCATCTCACCTGCTTTAACT
TATGTGTTTTCTTGATGTTTGCGAGTACATTCAAATTACTCACTGGCTTGTCACTGGCTA
TTGTCTTGGCCAGATTACTTTTGGAGAGGAGCACGATGTCGTCAACCCCATAATCTAGGA
GTCGAGGATAGCAACCTTGTGAGATAGGAATTCAACCAGGTCAGTTGTTCCTGTGGGAAT
GGAGTTCCATGGGTACTCGAGATTCCTCGAGTCGCTTCCATCGTCATCCTCAGACTTTTG
TCCAAACCAGTGGACCTTCATGGTCTTGTAACCCAGATTTTGTATTTTTCTTGGGATTTA
TGTATCAAGTGAGTGTCCACCAACTAACAGTAGTCCTGGGTTGGTTAACACAAAGGCCTG
TTTTTTACAAATTATTTTTCCAAAAAACCGGTCGTTACACACACGGAAGCGGGGATTTGC
AGTGGTGCCAGAGCTNCATAGAGANAAATAAGAGATATAATTATTTTGGGAGGTAAAAAA
AAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356131	2909	0.0	2293 - 2884	99	591 / 595	CUST_34142_PI390587928 CUST_2177_PI390587928	ABC13024 ABC17862 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
MLOC_63664.1	795	1e-150	159 - 683	85	448 / 525	None	ABC24039
AK353839	832	8e-143	558 - 832	100	275 / 275	None	ABC13024 ABC20255 ABC20590 ABC20943 ABC24039 ABC26250
AK363418	2741	4e-131	2109 - 2564	85	392 / 459	None	ABC13024 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
AK372258	2777	3e-127	2249 - 2663	87	361 / 416	CUST_41721_PI390587928	ABC16591 ABC17862 ABC20255 ABC24039
AK249315.1	2848	1e-125	1161 - 1576	87	361 / 417	CUST_41721_PI390587928	ABC16591 ABC17862 ABC20255 ABC24039
AK248553.1	2796	3e-122	2327 - 2774	85	384 / 454	None	ABC16591 ABC17862 ABC20943 ABC24039 ABC31291
AK357030	4472	2e-113	1758 - 2269	82	422 / 517	None	ABC16591 ABC17862 ABC20943 ABC24039 ABC26250 ABC31291
AK361220	2596	2e-113	2089 - 2564	83	396 / 479	None	ABC13024 ABC17054 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
MLOC_30588.1	483	3e-97	106 - 483	84	320 / 382	None	ABC24039
AK353600	354	2e-88	71 - 350	88	246 / 280	None	ABC13024 ABC16591 ABC17862 ABC20255 ABC20943 ABC24039 ABC31291
AK356447	915	3e-87	606 - 912	86	265 / 309	None	ABC16591 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250 ABC31291
AK371480	792	1e-80	543 - 792	88	222 / 251	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
AK375431	806	4e-76	553 - 803	87	220 / 252	None	ABC20255 ABC20943 ABC24039 ABC26250
AK360326	787	5e-75	522 - 780	87	225 / 260	None	ABC13024 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250
MLOC_24104.1	275	5e-75	1 - 273	85	234 / 274	None	ABC20255 ABC24039 ABC24055
AK370907	809	5e-70	550 - 807	85	221 / 259	CUST_3683_PI390587928	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250
AK369657	745	2e-69	531 - 739	90	188 / 210	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC26250
AK374319	1069	2e-68	564 - 858	83	245 / 296	None	ABC13024 ABC20255 ABC20943 ABC24039 ABC24268 ABC26250