barSeed - Barley Seed Development Database

Probe ABC31291

Source Contig ABC31291

barSeed

Links

Affymetrix Source Sequence (690 bp)

>ABC31291 690
GGGCCCGTGTGCCCAATTTCATCGCCGTCGGTGGCCACTGCCATGAGGAGCTCTGGTCAA
ATCCGCCGCAGCTAGTTCCTCCCGACGCCAAGCTTCTCCTCGTTTAGCCCCCTGGTGGCG
AGAGGGATCTTTTCCCCATAGCCATGAGTACCGGAGACTTCGGGCTACAGGGACCTCTAG
AAGGCCGACGCCGCCATCCGTCGGAGCCCGCGTCACCGGCGATTCCCTCCATACCCGTGC
GTGTGGAGTTCCGGGAGAATCGCCAGGACCCCCTGAATCCATTCCCGTGCCTCTGCGTGC
AAGATCTATAGCCAGTTGCCGGCGAGGATCCTTGGAGTGCCGCCCTGGTTCAACCACGGG
AGATGTTTGCGAGTACATTCAAAGTACGAACTGGCTTGTCCCTGGCTATTGTCTTCGCCA
GATTTCATTGGAGAGGAGCACGATGTCATCAACCCCGCGAATCTATGAGTCGAGGATAGC
AGCCTTGTGAGATAGGAACTTATCCAGGTCAACTATTCCTGTGGAAATGGAGTTCATGGG
CACTGGAGATTCCTCGAGTCGCTTCCGCCGTCAGCCTCAAACTTGGTTCAAACCAGTGGA
CCTTTATAGTCTTGTCACCCAAACTTTGTATTTTTTTCTTGGTATTTATGTATCAAGTGA
GTGTCCACTAGCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_81204.1	796	0.0	107 - 468	100	362 / 362	None	ABC31291
MLOC_74233.4	1664	7e-94	240 - 551	87	272 / 314	None	ABC16591 ABC24055 ABC31291
AK248553.1	2796	2e-85	2388 - 2699	85	268 / 315	None	ABC16591 ABC17862 ABC20943 ABC24039 ABC31291
AK357030	4472	2e-84	1895 - 2209	85	272 / 320	None	ABC16591 ABC17862 ABC20943 ABC24039 ABC26250 ABC31291
MLOC_40955.1	496	3e-83	165 - 476	85	268 / 316	None	ABC16591 ABC26250 ABC31291
MLOC_74233.3	313	1e-71	48 - 301	86	221 / 257	None	ABC16591 ABC31291
AK356447	915	1e-66	606 - 860	85	221 / 260	None	ABC16591 ABC17862 ABC20255 ABC20943 ABC24039 ABC26250 ABC31291
AK373565	1183	1e-61	542 - 796	84	217 / 259	None	ABC13024 ABC16591 ABC17862 ABC20255 ABC20943 ABC24268 ABC26250 ABC31291
AK353600	354	4e-61	71 - 312	84	207 / 245	None	ABC13024 ABC16591 ABC17862 ABC20255 ABC20943 ABC24039 ABC31291
MLOC_74235.1	967	2e-59	748 - 967	86	191 / 223	None	ABC16591 ABC31291
MLOC_38869.1	498	3e-52	248 - 492	82	203 / 247	None	ABC31291