barSeed - Barley Seed Development Database

Probe ABC22130

Source Contig ABC22130

barSeed

Links

Affymetrix Source Sequence (571 bp)

>ABC22130 571
TGCATCCACGCCGGCGGCAGGGCGGTGCTGGACGAGCTGGAGAGGAACCTGCAGCTGTCG
GAGTGGCACATGGAGCCGTCGCGGATGACGCTGCACCGGTTCGGCAACACCTCCAGCAGC
TCGCTGTGGTACGAGCTCGCCTACGCCGAGGCCAAGGGCCGGATCAGGAAGGGAGACCGC
ACCTGGCAGATCGCCTTCGGCTCCGGGTTCAAGTGCAACAGCGCCGTGTGGAGGGCGCTC
CGGTCCGTCAACCCGGCCAACCCCAAGGACGTCGCCGGCAACCCCTGGGCCGACGAGATC
CACAGGTTCCCCGTGCCCGTGCCAAAGTTCGCCGCCATCGATCCCACTCCCAGCGACACC
CACCACCAGTAAGGAGGGCCACGTACAGTACGTCTTTTGGTCGAGTGAGTCTGTAGCTAG
CATTAGCGAGCTGCTTGGGTTGCATTGGTAGTGTCTGTTAGCAGTAGAGTCTCAAGCTAG
GCATACGTAGTTGTGATTTACATTTACCATTATTGCATCTGATTGATGACATTTATAAAC
ACGTGCTTGTGCTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_74290.1	2058	0.0	1345 - 1898	100	554 / 554	CUST_25872_PI390587928	ABC04206 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18311 ABC20877 ABC22130 ABC41736
AK363216	1962	2e-79	1399 - 1637	89	214 / 240	CUST_19846_PI390587928 CUST_33615_PI390587928	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC_60050.1	1101	2e-79	438 - 676	89	214 / 240	CUST_33615_PI390587928	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC_51583.1	904	6e-74	339 - 597	86	224 / 260	None	ABC06409 ABC17547 ABC18311 ABC20877 ABC22130
MLOC_51583.2	2253	6e-74	304 - 562	86	224 / 260	None	ABC06409 ABC17547 ABC18311 ABC20877 ABC22130 ABC22900
MLOC_68976.1	2852	1e-61	1505 - 1735	85	198 / 232	CUST_909_PI390587928 CUST_908_PI390587928 CUST_4009_PI390587928	ABC04206 ABC06409 ABC17547 ABC18311 ABC20877 ABC22130
MLOC_17499.1	1880	3e-57	1303 - 1528	85	191 / 226	None	ABC05664 ABC06409 ABC17547 ABC18311 ABC20877 ABC22130 ABC41736
AK358061	2918	1e-51	1247 - 1477	83	191 / 231	CUST_20270_PI390587928 CUST_26178_PI390587928	ABC05664 ABC18311 ABC20877 ABC22130 ABC41146 ABC41736
MLOC_64056.1	2152	1e-51	1242 - 1472	83	191 / 231	CUST_20270_PI390587928 CUST_26178_PI390587928	ABC05664 ABC18311 ABC20877 ABC22130 ABC41146 ABC41736