barSeed - Barley Seed Development Database

Probe CUST_909_PI390587928

Source Contig U35_6365

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_909_PI390587928	Hv_44K_v2	GAGGAGGGGCCAATCTCTATTTTTGATTTACATGAGAAATTAAGAGATTCATTCATGGTG	586	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.404	1.292	1.482	1.025	0.439	0.359
Raw	995.562	1443.961	1435.387	1489.860	232.845	207.199

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68976.1	2852	2e-24	2230 - 2289	100	60 / 60	plus	ABC04206 ABC06409 ABC17547 ABC18311 ABC20877 ABC22130
JLOC1	JLOC1_45686.1	2507	8e-25	2264 - 2323	100	60 / 60	plus
Harvest35	U35_6365	666	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_6365 666 Hv_44K_v2
CCTACATGGAGGCCAAGGGCCGCGTCCGGCGCGGCGACCGCATCTGGCAGATCGCCTTCG
GCAGCGGCTTCAAGTGCAACAGCGCCGTCTGGCACGCCCTGCGCAACGTCAAGCCGTCGC
CCACCACCCCCTGGGACGACTGCATCGACCGCTACCCGGTGGAGCTCGTCGACGGCTTCC
CCACCCACACCCACAAGTAACAGCAGCAGCAGCAAGCACCCATGGCCATTGGAGCTCTTC
CTGATACAGAAACCTCACTCAGAATGGATCAATTCAAATCCATTTATGGCTGGTTACAAG
AGACACAATTAATGGTACTGCAAGAATGAATCTCCAGGCGTGGTGCAAGTCTGCTCTGCT
CTGATCTGTATGAATGCAACTCTGTGCTCATCTTCAAGAAGGTTTTGACCATCCTGCCCT
GACCCTGTGGTGGTAAGTTTTACTCCAGTAGTAGCATAGCAGAGTGGTGCTGAGAAGGTC
AGTCAATGAGATATGCCTCTTGTGTTGTTGTACTATGTACATTTGTTGTCTCTTTTAGCC
ATTGCTGCCGATTTGCCATTCACCATACAAAGTGACTGGTCCATAGGAGGAGGGGCCAAT
CTCTATTTTTGATTTACATGAGAAATTAAGAGATTCATTCATGGTGGTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_6365 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None