barSeed - Barley Seed Development Database

Probe ABC17547

Source Contig ABC17547

barSeed

Links

Affymetrix Source Sequence (1282 bp)

>ABC17547 1282
GCGGAGCTTCAACCTCGGCGGGATGGGCTGCAGCGCCGGCGTCATCGCCATCGACCTCGC
GCGCGACATGCTCCAGGTGCACCGCGGCACCTACGCCGTGGTGGTGAGCACGGAGAACAT
CACGCAGAACTGGTACTTCGGCAACCGCAAGTCGATGCTCATCCCCAACTGCCTCTTCCG
CGTCGGCTGCTCGGCGGTGCTCCTCTCCAACCGCGGCGCCGACCGCCGCCGTGCCAAGTA
CAGCCTCAAGCACGTGGTGCGCACGCACAAGGGCGCCGACGACAAGGCCTTCAACTGCGT
GTACCAGGAGCAGGACAGCGAGGGCAAGACCGGCGTGTCCCTGTCCAAGGACCTGATGGC
GATCGCCGGCGGCGCGCTCAAGACCAACATCACGACCCTCGGCCCACTCGTGCTCCCCTT
CAGCGAGCAGCTGCTCTTCTTCGCCACGCTGGTGTCCAAGAAGCTCTTCAACGCCAAGGT
GAAGCCTTACATCCCGGACTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACGCCGGCGG
GCGCGCGGTGATCGACGAGCTGGAGAAGAACCTGCAGCTGCAGCCGGTGCACGTGGAGGC
GTCCCGGATGACGCTGCACCGGTTCGGCAACACCTCGAGCAGCTCCATCTGGTACGAGCT
CGCCTACATGGAGGCCAAGGGCCGCGTCCGGCGCGGCGACCGCATCTGGCAGATCGCCTT
CGGCAGCGGCTTCAAGTGCAACAGCGCCGTCTGGCACGCCCTGCGCAACGTCAAGCCGTC
GCCCACCACCCCCTGGGACGACTGCATCGACCGCTACCCGGTGGAGCTCGTCGACGGCTT
CCCCACCCACACCCACAAGTAACAGCAGCAGCAGCAAGCACCCATGGCCATTGGAGCTCT
TCCTGATACAGAAACCTCACTCAGAATGGATCAATTCAAATCCATTTATGGCTGGTTACA
AGAGACACAATTAATGGTACTGCAAGAATGAATCTCCAGGCGTGGTGCAAGTCTGCTCTG
CTCTGATCTGTATGAATGCAACTCTGTGCTCATCTTCAAGAAGGTTTTGACCATCCTGCC
CTGACCCTGTGGTGGTAAGTTTTACTCCAGTAGTAGCATAGCAGAGTGGTGCTGAGAAGG
TCAGTCAATGAGATATGCCTCTTGTGTTGTTGTACTATGTACATTTGTTGTCTCTTTTAG
CCATTGCTGCCGATTTGCCATTCACCATACAAAGTGACTGGTCCATAGGAGGAGGGGCCA
ATCTCTATTTTTGATTTACATG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_68976.1	2852	0.0	983 - 2263	100	1281 / 1281	CUST_4009_PI390587928 CUST_909_PI390587928 CUST_908_PI390587928	ABC04206 ABC06409 ABC17547 ABC18311 ABC20877 ABC22130
MLOC_74290.1	2058	0.0	826 - 1575	85	639 / 753	CUST_25872_PI390587928	ABC04206 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18311 ABC20877 ABC22130 ABC41736
MLOC_51583.2	2253	3e-179	267 - 1081	81	670 / 828	None	ABC06409 ABC17547 ABC18311 ABC20877 ABC22130 ABC22900
AK363216	1962	1e-173	879 - 1629	82	624 / 764	CUST_33615_PI390587928 CUST_19846_PI390587928	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC_60050.1	1101	2e-157	446 - 1101	82	544 / 662	CUST_33615_PI390587928	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC_51583.1	904	7e-146	302 - 888	83	494 / 596	None	ABC06409 ABC17547 ABC18311 ABC20877 ABC22130
MLOC_17499.1	1880	4e-89	797 - 1533	75	574 / 761	None	ABC05664 ABC06409 ABC17547 ABC18311 ABC20877 ABC22130 ABC41736
MLOC_8870.1	1804	3e-70	319 - 1048	74	555 / 751	CUST_26156_PI390587928	ABC05664 ABC06409 ABC17547 ABC18311 ABC41146 ABC41736