barSeed - Barley Seed Development Database

Probe ABC05663

Source Contig ABC05663

barSeed

Links

Affymetrix Source Sequence (1935 bp)

>ABC05663 1935
GGTTGTTCGCGACGGCAAGGTCAGGAGAGAGACGAGTGCGGCGCCAGAAGGCGGCAACCG
CGGCGGCGGCGGAGGAGGAGGACCCGGCGCCGTCTCCGAGGCGGAGTCCGGTGGCACTGA
TCGTCGCTCCGGCCATTTGAGCGGGGCACCATGTCCATGGAGGACAGCACGCCGCCGGCC
GGTGCCAACGCCGGCGAACGCGCGAGCTCGCCGTCGCCGTCGCGTCGCCTGCCGGACTTC
CTGCAGTCGGTGCGGCTCAAGTACGTTAAGCTGGGGTACCACTACCTCATCACCCACGGC
ATGTACCTCCTGCTGACCCCACTCATCGTGCTCATCGCCGTCCACCTCTCCACGCTCTCT
CCGGGCGACGTCGCAGACCTGTGGACGCACCTCCGCTTCAACCTCCTCTCCGTCATCGCC
TGCTCCACGCTCCTCGTTTTCCTCTCCACCGTCTACTTCCTCACCCGCCCGCGCTCCGTC
TACCTCGTCGACTTCGGTTGCTACAAGCCCGGCCCGGAGCGCCGGTGCTCGCGTGACACC
TTCATGCGCTGCTCCAAGCTCACAGGCAACTTCACCGAAGCTAACCTCGATTTCCAGCGC
AAGATCCTTGAGCGCTCCGGTCTCGGCGAGGACACTTACATCCCTCCTGCCTTGGTCACC
GTGCCGCCCAACCCCTCCATGGACCTGGCGCGCCAGGAGGCGCAGGTCTGCATGTTCGGT
GCCATCGACAACATGCTTGCCAAGACCGGGGTGAAGCCCAAGGACATTGGGATTCTTGTT
GTGAATTGCAGCCTGTTCAACCCGACGCCGTCACTGTCCGCCATGGTGGTGAACCATTAC
AAGCTGAGAGGGAACATAATCAGCTACAATCTGGGAGGAATGGGGTGCAGTGCCGGGCTC
TTGTCCATAGATCTGGCCAAGGATTTGCTTCAGGTGCATCCCAACTCGTACGCCATGGTG
GTCAGCACCGAGAACATTACCCTGAATTGGTATTTTGGGAACAACCGGTCGATGCTCGTG
TCGAATTGCCTGTTCCGGATGGGTTGCGCTGCGATCCTGCTGTCGAACAAGCGGTCAGAC
AGGAGGAGGTCCAAGTACGAGCTGGTACACACCGTGAGAACTCACAAGGGTGCAGATGAC
AAGTGCTTCAGCTGTGTCACCCAGGAGGAGGATGACAGTGGCAAGGTTGGCGTCGCACTG
TCCAAGGACCTCATGGCGGTGGCTGGGGATGCGCTCAAGACGAACATCACAACGCTTGGG
CCGCTTGTGTTGCCATTCTCGGAGCAGCTGCTGTTCATGGTCACATTGGTTGGCAAGAAG
CTGTTCAAGATGAAGATCAAGCCATACATTCCTGACTTCAAGCTGGCATTCGAGCACTTC
TGCATCCACGCTGGTGGGCGCGCTGTGCTTGATGAGATAGAGAAGAACATGGACCTCACC
GATTGGCACATGGAGCCGTCTCGGATGACTCTCTTCCGTTTCGGCAACACGTCCAGCAGC
TCGCTGTGGTACGAGCTGGCCTACAGCGAGGCAAAGGGGAGGATCAGGAGGCGTGACAGG
ATATGGCAGATAGCGTTCGGCTCGGGGTTCAAGTGTAACAGCGCCGTCTGGAAGGCACTG
AGGTCAGTGAACCCAGCGAAGGAGCAGAACAACCCCTGGATGGACGAGATCGACACATTC
CCGGTGGAGGTTCCCAAGGTGTCCAAGGTTGCTGAATAATTTTGCCTTTTCAGCATTGTC
ACCCGAAACAGGAAGCGCGCAAATCTTGCCATTGAATTCGACTGTATTCAATATGTTTGG
GTGATCTGTCGGGTATTAATTTTAGATGATTCCATTTAGGTGGTACAGAGGGGTGTGATG
TCGTGCTGTTCACTATTTATGCCATTGATCAGTTCTAAAAAAAAAAAAAAAAATGTGCAT
CGACTGCCTTGCATT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_61063.2	2173	0.0	147 - 2044	100	1898 / 1898	CUST_26746_PI390587928 CUST_26152_PI390587928	ABC05663 ABC30485
MLOC_61063.1	2471	6e-69	147 - 289	100	143 / 143	CUST_26746_PI390587928 CUST_26152_PI390587928	ABC05663 ABC30485
MLOC_61063.3	1453	0.0	16 - 1453	100	1438 / 1438	None	ABC05663
AK363216	1962	0.0	247 - 1729	83	1228 / 1486	CUST_19846_PI390587928 CUST_33615_PI390587928	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC_60050.1	1101	0.0	344 - 1101	82	626 / 760	CUST_33615_PI390587928	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC_60051.1	825	2e-162	1 - 611	84	512 / 612	CUST_19846_PI390587928	ABC05663
MLOC_60051.2	812	2e-162	1 - 611	84	512 / 612	CUST_19846_PI390587928	ABC05663
MLOC_60051.3	815	2e-162	1 - 611	84	512 / 612	CUST_19846_PI390587928	ABC05663