barSeed - Barley Seed Development Database

Probe CUST_26152_PI390587928

Source Contig U35_15186

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26152_PI390587928	Hv_44K_v2	ATTTAGGTGGTACAGAGGGGTGTGATGTCGTGCTGTTCACTATTTATGCCATTGATCAGT	1845	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.402	1.317	1.103	0.859	0.387	0.403
Raw	9136.243	13132.167	9722.880	12051.443	1897.410	2148.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61063.1	2471	2e-24	2277 - 2336	100	60 / 60	plus	ABC05663 ABC30485
MLOC	MLOC_61063.2	2173	2e-24	1979 - 2038	100	60 / 60	plus	ABC05663 ABC30485
JLOC1	JLOC1_39865.2	2082	8e-25	1792 - 1851	100	60 / 60	plus
JLOC1	JLOC1_39865.1	2156	8e-25	1866 - 1925	100	60 / 60	plus
Harvest21	ABC05663	1935	3e-25	1834 - 1893	100	60 / 60	plus	ABC05663
Harvest35	U35_41015	741	3e-25	60 - 119	100	60 / 60	minus
Harvest35	U35_15186	1928	3e-25	1846 - 1905	100	60 / 60	plus

Contig Sequence (1928 bp)

>U35_15186 1928 Hv_44K_v2
CTCCCCCTCCCGTGTTGTTCGCGACGGCAAGGTCAGGAGAGAGACGAGTGCGGCGCCAGA
AGGCGGCAACCGCGGCGGCGGCGGAGGAGGAGGACCCGGCGCCGTCTCCGAGGCGGAGTC
CGGTGGCACTGATCGTCGCTCCGGCCATTTGAGCGGGGCACCATGTCCATGGAGGACAGC
ACGCCGCCGGCCGGTGCCAACGCCGGCGAACGCGCGAGCTCGCCGTCGCCGTCGCGTCGC
CTGCCGGACTTCCTGCAGTCGGTGCGGCTCAAGTACGTTAAGCTGGGGTACCACTACCTC
ATCACCCACGGCATGTACCTCCTGCTGACCCCACTCATCGTGCTCATCGCCGTCCACCTC
TCCACGCTCTCTCCGGGCGACGTCGCAGACCTGTGGACGCACCTCCGCTTCAACCTCCTC
TCCGTCATCGCCTGCTCCACGCTCCTCGTTTTCCTCTCCACCGTCTACTTCCTCACCCGC
CCGCGCTCCGTCTACCTCGTCGACTTCGGTTGCTACAAGCCCGGCCCGGAGCGCCGGTGC
TCGCGTGACACCTTCATGCGCTGCTCCAAGCTCACAGGCAACTTCACCGAAGCTAACCTC
GATTTCCAGCGCAAGATCCTTGAGCGCTCCGGTCTCGGCGAGGACACTTACATCCCTCCT
GCCTTGGTCACCGTGCCGCCCAACCCCTCCATGGACCTGGCGCGCCAGGAGGCGCAGGTC
TGCATGTTCGGTGCCATCGACAACATGCTTGCCAAGACCGGGGTGAAGCCCAAGGACATT
GGGATTCTTGTTGTGAATTGCAGCCTGTTCAACCCGACGCCGTCACTGTCCGCCATGGTG
GTGAACCATTACAAGCTGAGAGGGAACATAATCAGCTACAATCTGGGAGGAATGGGGTGC
AGTGCCGGGCTCTTGTCCATAGATCTGGCCAAGGATTTGCTTCAGGTGCATCCCAACTCG
TACGCCATGGTGGTCAGCACCGAGAACATTACCCTGAATTGGTATTTTGGGAACAACCGG
TCGATGCTCGTGTCGAATTGCCTGTTCCGGATGGGTTGCGCTGCGATCCTGCTGTCGAAC
AAGCGGTCAGACAGGAGGAGGTCCAAGTACGAGCTGGTACACACCGTGAGAACTCACAAG
GGTGCAGATGACAAGTGCTTCAGCTGTGTCACCCAGGAGGAGGATGACAGTGGCAAGGTT
GGCGTCGCACTGTCCAAGGACCTCATGGCGGTGGCTGGGGATGCGCTCAAGACGAACATC
ACAACGCTTGGGCCGCTTGTGTTGCCATTCTCGGAGCAGCTGCTGTTCATGGTCACATTG
GTTGGCAAGAAGCTGTTCAAGATGAAGATCAAGCCATACATTCCTGACTTCAAGCTGGCA
TTCGAGCACTTCTGCATCCACGCTGGTGGGCGCGCTGTGCTTGATGAGATAGAGAAGAAC
ATGGACCTCACCGATTGGCACATGGAGCCGTCTCGGATGACTCTCTTCCGTTTCGGCAAC
ACGTCCAGCAGCTCGCTGTGGTACGAGCTGGCCTACAGCGAGGCAAAGGGGAGGATCAGG
AGGCGTGACAGGATATGGCAGATAGCGTTCGGCTCGGGGTTCAAGTGTAACAGCGCCGTC
TGGAAGGCACTGAGGTCAGTGAACCCAGCGAAGGAGCAGAACAACCCCTGGATGGACGAG
ATCGACACATTCCCGGTGGAGGTTCCCAAGGTGTCCAAGGTTGCTGAATAATTTTGCCTT
TTCAGCATTGTCACCCGAAACAGGAAGCGCGCAAATCTTGCCATTGAATTCGACTGTATT
CAATATGTTTGGGTGATCTGTCGGGTATTAATTTTAGATGATTCCATTTAGGTGGTACAG
AGGGGTGTGATGTCGTGCTGTTCACTATTTATGCCATTGATCAGTTCTAAAAAAAAAAAA
AAAAAAAA

Homology of Contig U35_15186 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g39750.2	520	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi3g07730.1	520
Arabidopsis v10	AT2G26640.1	509	\| Symbols: KCS11 \| 3-ketoacyl-CoA synthase 11 \| chr2:11330094-11331623 FORWARD LENGTH=509