barSeed - Barley Seed Development Database

Probe ABC20409

Source Contig ABC20409

barSeed

Links

Affymetrix Source Sequence (1250 bp)

>ABC20409 1250
GTTAGAAGTCATGGAGGAAACATCCAAGTTGCAGAACCACTCAAACCACACCCATGAAGC
ACAGGTCAAAAGCCTTGAAGAGTTTCAAAAGGCTTATGAGGAACAATCCAAGTCTGAGGA
ACAGAGGCTTCTGGCAGATATCACCAGTTTGGTGTCCAAACACATTGTTCGACAAAGAGA
GCTGGTGGATGTTAGATTAAACTCTCTTGGCGATGCTGCTCGTGGTAACAAGACATTTCT
GGACGAGCACACATCTGCTATGGAGGGTGTCACAAAGGATGCCAAGAGAAAGTGGGAAAT
GTTTGCAGAGCAAGCAGAGAATGACTGCAAAGTTGGCTCCAGCTTCTCTTCAGCTAAGCA
TTGCCGCATGGAAACAATTATGCAGGAGTGTGCATGCACTGTCGACTCTGCTGCTCAACA
ATGGAAAAAATCCCATGCTGCAGTTAATGATTTGTGCACAAAACAAGTGGCTGAAGTTGA
AGTATTTGTCAGGGCTGCAATCGAAAACAACGAGCAGCATGAAGCAGGGATTGCATCATC
TCGTGCCTTGGCTGAAGAACAAGCATCCAACAGTAGCAAAGAAATACTGCAGGACATCGA
CGATCTACTGGAAGAGGCACGTAATTCATCATCAAGAGTTGTGACGACAGTGGAAGCACA
TTCGGTAGAGATACAGCATTTGCAGGACAACCACTCTGGACAGACTTCAGGCGTCAACAC
ACATGCCGAGAAGGCTTTCCAAAGCAGCTACAGGGACTATGAGCCGACTGGTGAAACTCC
GGTGAGGTGTGAGCCGGAAGTCCCGAGCAAAGGCACGATCGAGTCGTTGCGAGCGATGCC
AATCGAGTCCCTGATGGATGAGTTCCGTGAGAACCATCCCTATGAATCGAGCAAGGAACC
CAAGCCGTCGCTCATCCCTCGCTCGCCACTTGCGACACTCAACTGAGAAACAATGATAAT
ACTTCTTTTCTGTGTGCAGTGTAATCTGATTAGGACATCAAATCGCTGCTGGCTTTGATG
TCCTTGTTGTGCCAGGTTTTATGGGATGCTAGCCCTCATCCAGTGTCTTTTGCATTCTTG
CTAGAATGTATCAATTTGTTGTGGAGCCGCCGAATATTCTTGTAAAAAATTCTATGACGA
GTGTCTTTTGCATTCCTGCTAGAATGTATCAATTTGTTGTGGAGCCGCCGAATATTCTTG
TAAAAAATTCTATGACGAGTGTCTTTTGCATTCCTGCTAGAATGTATCAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_66195.2	2344	1e-64	1 - 138	99	137 / 138	CUST_31433_PI390587928	ABC20409 ABC38352
MLOC_66195.1	5505	5e-73	1983 - 2138	99	154 / 156	CUST_6320_PI390587928 CUST_8647_PI390587928 CUST_4934_PI390587928 CUST_13250_PI390587928 CUST_31433_PI390587928	ABC15196 ABC20409 ABC22174 ABC38352
MLOC_66195.3	3421	0.0	2234 - 3421	99	1187 / 1188	CUST_4934_PI390587928 CUST_31433_PI390587928	ABC20409 ABC38352
MLOC_66195.4	3276	0.0	1 - 948	99	946 / 948	CUST_4934_PI390587928 CUST_31433_PI390587928	ABC20409
MLOC_66194.1	2442	5e-73	1901 - 2056	99	154 / 156	CUST_6320_PI390587928 CUST_8647_PI390587928 CUST_13250_PI390587928	ABC15196 ABC20409 ABC22174 ABC38352