barSeed - Barley Seed Development Database

Probe CUST_4934_PI390587928

Source Contig U35_19031

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4934_PI390587928	Hv_44K_v2	ATCTTCTTGCACCAGAGGAGATATCTAAGGTTGCTCTGGAAGAACGGCAGAAAAGCCATT	675	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.160	1.061	1.137	0.709	0.347	0.300
Raw	509.866	646.584	673.044	622.710	112.276	108.942

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66195.3	3421	7e-23	644 - 704	98	60 / 61	plus	ABC20409 ABC38352
MLOC	MLOC_66195.6	1390	7e-23	626 - 686	98	60 / 61	minus	None
MLOC	MLOC_66195.7	1255	7e-23	548 - 608	98	60 / 61	minus	None
MLOC	MLOC_66195.1	5505	7e-23	4805 - 4865	98	60 / 61	minus	ABC15196 ABC20409 ABC22174 ABC38352
MLOC	MLOC_66195.5	1652	7e-23	924 - 984	98	60 / 61	minus	None
MLOC	MLOC_66195.4	3276	7e-23	2549 - 2609	98	60 / 61	minus	ABC20409
JLOC1	JLOC1_43598.1	4500	4e-23	662 - 722	98	60 / 61	plus
Harvest35	U35_19031	755	3e-25	676 - 735	100	60 / 60	plus

Contig Sequence (755 bp)

>U35_19031 755 Hv_44K_v2
TCGAGTACTGTTGGCCTACTGAATCTCACACTCGGCGGCCACTTCCCCAAAATTTTGAAT
TCCCCACATCCTCTCCCAAACCCCAAGCCACCGCCCCGCTCCACTCCGAAAGTTTCCGAA
TCCCCCACGCCGCACCGCGGAACGGGAGGGATTTCGAAATCTCCCAGGCCGCCGCCGCCG
CCGCCGCCATGTCGCGGCTGGACAAGGAGAAGTCGGTGAACGTCCAGGTCCTTCTCCGCT
GCAGGCCGTTCAGCGACGACGAACTCCGGAGCAACGCGCCGCAGGTGGTCACCTGCAACG
ACTACCAGCGGGAGGTCGCCGTCACGCAGACCATCGCCGGGAAGCAGATCGACAGGGTCT
TCACGTTCGACAAGGTTTTTGGCCCAACAGCTAGGCAGAGAGACTTGTATGATCAAGCCA
TCATTCCTATCGTGAACGAGGTGCTGGAAGGGTTTAATTGCACCATCTTCGCCTATGGCC
AGACGGGCACTGGGAAGACTTATACCATGGAAGGAGAATGTCGGAGAGCCAAGAGTGGAC
CGGAGGGACAGTTACCTTCAGACGCAGGGGTCATACCTAGGGCCGTTAAGCAGATATTTG
ATACATTGGAGAGGCAGAATACTGAGTACAGTGTTAAGGTCACATTTTTGGAACTGTACA
ATGAGGAAATAACAGATCTTCTTGCACCAGAGGAGATATCTAAGGTTGCTCTGGAAGAAC
GGCAGAAAAGCCATTGCCCTCATGGAGATGGGAAG

Homology of Contig U35_19031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02670.1	1057	2e-74	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g42837.1	1007	2e-114
Arabidopsis v10	AT2G36200.2	1040	2e-99	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:15180078-15185189 REVERSE LENGTH=1040